Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70641 | Canola | cytosol, nucleus, plastid | 5.53 | 6.7 |
| AT4G15885.1 | Thale cress | nucleus | 0.79 | 1.77 |
| CDY28354 | Canola | cytosol | 4.74 | 1.34 |
| CDX90558 | Canola | nucleus | 0.79 | 1.02 |
| CDY34961 | Canola | cytosol | 0.4 | 0.56 |
| CDY51069 | Canola | cytosol | 0.79 | 0.5 |
| TraesCS1A01G095000.4 | Wheat | cytosol | 1.58 | 0.5 |
| TraesCS1D01G104200.1 | Wheat | cytosol | 1.58 | 0.5 |
| TraesCS1B01G123200.1 | Wheat | cytosol | 1.58 | 0.5 |
| Os05t0154700-01 | Rice | plasma membrane | 1.58 | 0.49 |
| HORVU1Hr1G022250.2 | Barley | plastid | 1.58 | 0.45 |
| Os03t0773600-01 | Rice | cytosol | 1.19 | 0.41 |
| Zm00001d037599_P001 | Maize | extracellular | 1.19 | 0.37 |
| EES17741 | Sorghum | cytosol | 1.19 | 0.37 |
| GSMUA_Achr11P... | Banana | cytosol | 1.19 | 0.37 |
| Zm00001d009840_P001 | Maize | cytosol, mitochondrion | 1.19 | 0.36 |
| PGSC0003DMT400021738 | Potato | cytosol | 0.79 | 0.3 |
| CDY34962 | Canola | cytosol | 0.79 | 0.26 |
| Bra021186.1-P | Field mustard | cytosol | 0.79 | 0.25 |
| GSMUA_Achr2P01660_001 | Banana | cytosol | 0.79 | 0.25 |
| AT3G16630.1 | Thale cress | cytosol | 0.79 | 0.25 |
| Solyc12g099540.1.1 | Tomato | cytosol | 0.79 | 0.25 |
| PGSC0003DMT400011996 | Potato | cytosol | 0.79 | 0.25 |
| Solyc05g054260.2.1 | Tomato | nucleus | 0.79 | 0.25 |
| KRH50824 | Soybean | cytosol | 0.79 | 0.25 |
| KRH02264 | Soybean | cytosol | 0.79 | 0.25 |
| VIT_05s0020g01200.t01 | Wine grape | cytosol | 0.79 | 0.25 |
| Bra012755.1-P | Field mustard | cytosol | 0.79 | 0.24 |
| Bra022171.1-P | Field mustard | cytosol | 0.79 | 0.24 |
| KRH12061 | Soybean | cytosol | 0.79 | 0.23 |
| KRH37102 | Soybean | cytosol | 0.79 | 0.23 |
| CDY43118 | Canola | endoplasmic reticulum | 0.79 | 0.21 |
| Os01t0605500-00 | Rice | plastid | 0.4 | 0.13 |
| Solyc01g066820.2.1 | Tomato | cytosol | 0.4 | 0.13 |
| VIT_00s0160g00140.t01 | Wine grape | extracellular | 0.0 | 0.0 |
| VIT_06s0009g02690.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_10s0042g00380.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| CDX75887 | Canola | cytosol | 0.0 | 0.0 |
| Os05t0459400-01 | Rice | cytosol, plastid | 0.0 | 0.0 |
| CDY51066 | Canola | cytosol | 0.0 | 0.0 |
| Os04t0375900-01 | Rice | cytosol | 0.0 | 0.0 |
| CDX92088 | Canola | cytosol | 0.0 | 0.0 |
| Os01t0625200-01 | Rice | cytosol | 0.0 | 0.0 |
| CDY70227 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.4.1.1.2 | Gene3D:3.30.70.330 | EntrezGene:4337846 | ProteinID:BAF16599.1 | ProteinID:BAS92346.1 | ProteinID:EEE62381.1 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005685 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030619 | GO:GO:0035614 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os05g0154800 | EnsemblPlants:Os05t0154800-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR10501 |
| PANTHER:PTHR10501:SF40 | UniProt:Q0DKM4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000A7F0A | RefSeq:XP_015640775.1 | SEG:seg | : | : | : |
Description
Similar to U1snRNP-specific protein, U1A. (Os05t0154800-01)
Coordinates
chr5:+:3210669..3213944
Molecular Weight (calculated)
28205.3 Da
IEP (calculated)
9.738
GRAVY (calculated)
-0.384
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEVAAAVG GGAPEENGAP PNVTIYINNL NEKIKLEELK KSLRAVFSQF GKILDVLAFK TLKHKGQAWV VFEDVASATE ALKSMQDFPF HNKPMRIQYA
101: KTKSDIIAKA DGTFVPRERR KRNDEKPEKK QKREQHHDVS QVGLGVNAYP GVYGAPPLSQ LPFAGAQKVM MPEIIVPNNI LFVQNLPHET TPMMLQMLFC
201: QYPGFKEVRM VEAKPGIAFV EYGDEGQATA AMNHLQGFKI TKDNQMLISY AKK
101: KTKSDIIAKA DGTFVPRERR KRNDEKPEKK QKREQHHDVS QVGLGVNAYP GVYGAPPLSQ LPFAGAQKVM MPEIIVPNNI LFVQNLPHET TPMMLQMLFC
201: QYPGFKEVRM VEAKPGIAFV EYGDEGQATA AMNHLQGFKI TKDNQMLISY AKK
001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
Arabidopsis Description
U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.