Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003706 | Potato | plasma membrane | 100.0 | 39.75 |
| PGSC0003DMT400064764 | Potato | plasma membrane | 4.41 | 3.76 |
| PGSC0003DMT400071049 | Potato | plasma membrane, vacuole | 1.76 | 1.9 |
| PGSC0003DMT400040993 | Potato | plasma membrane | 2.2 | 1.42 |
| PGSC0003DMT400054846 | Potato | plasma membrane | 1.76 | 1.19 |
| PGSC0003DMT400062384 | Potato | plasma membrane | 1.76 | 1.14 |
| PGSC0003DMT400045308 | Potato | plasma membrane | 1.32 | 0.88 |
| PGSC0003DMT400052756 | Potato | plasma membrane | 0.88 | 0.56 |
| PGSC0003DMT400009998 | Potato | golgi, mitochondrion, peroxisome, plastid | 0.88 | 0.56 |
| PGSC0003DMT400033107 | Potato | endoplasmic reticulum, plasma membrane | 0.44 | 0.38 |
| PGSC0003DMT400069910 | Potato | endoplasmic reticulum, plasma membrane | 0.44 | 0.33 |
| PGSC0003DMT400021093 | Potato | endoplasmic reticulum, plasma membrane | 0.44 | 0.32 |
| PGSC0003DMT400076739 | Potato | plasma membrane | 0.44 | 0.32 |
| PGSC0003DMT400020171 | Potato | cytosol | 0.44 | 0.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042052 | EnsemblPlantsGene:PGSC0003DMG400016308 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005777 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010468 | InterPro:Marf1 | InterPro:NYN_limkain-b1 |
| PANTHER:PTHR14379 | PANTHER:PTHR14379:SF7 | PFAM:PF01936 | PGSC:PGSC0003DMG400016308 | SEG:seg | UniParc:UPI0002949BB9 |
| UniProt:M1BCF0 | MapMan:35.2 | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016308]
Coordinates
chr6:+:40343158..40343841
Molecular Weight (calculated)
24983.3 Da
IEP (calculated)
9.909
GRAVY (calculated)
-0.396
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFWAVDNPA PANYLLISGS ADFSYAIHQL RMRRYNILLA QPFNNASPAL AAAATNVWQW TTLAAGKSQR ELAFRNTNTL RQYYIPIPIS KPTSANQPAY
101: SNANANANTS KAQSLYNPGR YFDTPKTIYV PKNSNQLTTT SMSGTPAIVE EASSSNYPRA PDVAPVLFAP HLFFTKSDSS EKHNSRIEET SSSWCPRSPM
201: VASHLLFAKS DSSNVKLGLE LNLNSKS
101: SNANANANTS KAQSLYNPGR YFDTPKTIYV PKNSNQLTTT SMSGTPAIVE EASSSNYPRA PDVAPVLFAP HLFFTKSDSS EKHNSRIEET SSSWCPRSPM
201: VASHLLFAKS DSSNVKLGLE LNLNSKS
001: MSTAEADYVK AKTSVWWDIE NCEVPRGWDA HVIALNVSSS LLKMNYCGPV SISAYGDTNL IPLHHQQALS STGVALNHIP AGVKDASDKK ILVDMLLWAI
101: DNPAPANLLL ISGDRDFSNA LHQLRMRRYN ILLAQPPRAS VPLVAAARDV WLWTVLASGG PPLTSVESSL LFNNGGFRVS NKGVSKLPVS EQAQPSQPTG
201: STSNAGDTKD HKTREKHVPR GSLQENRKNM LQHSSGATGE SATTCRICNV VCDSFEKFTA HLSDIRHISQ AAIVESRRAQ ASVSAKPIHQ AVLVEPLLCK
301: VCQISFTNND TYKNHTYGKK HRNNLELQSG KSKNILVGPA EPSKEVLEKH NMNKKVMIES RAQANAEFVC LMCNVVCQSQ IVFNSHLRGK KHANMLSQSE
401: ALIVSTKLQE KGVGEKEQPS ETVAELQLQS QKAQEKQVPM VNQLEVLVDS KKLPEKGDEV KGQPKEMTAL RNASAKYICR MCNVGCHSPI VFETHLRGQK
501: HAANLNQSKD QALIDSKKLQ EKGFGEKEQP RETIVEPQLQ SQNAQENSKC FEKHVVMVNQ SEVLINASKL EEKDAQEKAQ PIESIAEPQS QSQNTQEHTK
601: FFEKQNEELR KICGTLESSV KEPLPSTKDW VETLNKQIPN GEFFFGDLRS DFEVPREASE CFDGIVKPVN LSKGETKHSW EVKKKKIEVT VRHARPAASK
701: LCHLCVVICD SRGLSTVVCD NKAHWPNQKH TTVVTLTSCS TSLSLINIKP F
101: DNPAPANLLL ISGDRDFSNA LHQLRMRRYN ILLAQPPRAS VPLVAAARDV WLWTVLASGG PPLTSVESSL LFNNGGFRVS NKGVSKLPVS EQAQPSQPTG
201: STSNAGDTKD HKTREKHVPR GSLQENRKNM LQHSSGATGE SATTCRICNV VCDSFEKFTA HLSDIRHISQ AAIVESRRAQ ASVSAKPIHQ AVLVEPLLCK
301: VCQISFTNND TYKNHTYGKK HRNNLELQSG KSKNILVGPA EPSKEVLEKH NMNKKVMIES RAQANAEFVC LMCNVVCQSQ IVFNSHLRGK KHANMLSQSE
401: ALIVSTKLQE KGVGEKEQPS ETVAELQLQS QKAQEKQVPM VNQLEVLVDS KKLPEKGDEV KGQPKEMTAL RNASAKYICR MCNVGCHSPI VFETHLRGQK
501: HAANLNQSKD QALIDSKKLQ EKGFGEKEQP RETIVEPQLQ SQNAQENSKC FEKHVVMVNQ SEVLINASKL EEKDAQEKAQ PIESIAEPQS QSQNTQEHTK
601: FFEKQNEELR KICGTLESSV KEPLPSTKDW VETLNKQIPN GEFFFGDLRS DFEVPREASE CFDGIVKPVN LSKGETKHSW EVKKKKIEVT VRHARPAASK
701: LCHLCVVICD SRGLSTVVCD NKAHWPNQKH TTVVTLTSCS TSLSLINIKP F
Arabidopsis Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain [Source:TAIR;Acc:AT5G61190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.