Factsheet for PGSC0003DMT400054846

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 3
golgi 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	golgi, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14410.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G14410.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007610.2.1	Tomato	plasma membrane	98.81	98.81
PGSC0003DMT400071049	Potato	plasma membrane, vacuole	53.12	85.24
CDX98450	Canola	plasma membrane	83.68	83.43
VIT_15s0046g00460.t01	Wine grape	cytosol, plasma membrane, vacuole	82.79	82.79
KRH43853	Soybean	plasma membrane	81.6	82.58
KRH13610	Soybean	endoplasmic reticulum, plasma membrane, vacuole	81.6	82.58
Bra021553.1-P	Field mustard	extracellular, plasma membrane, vacuole	69.73	82.46
AT3G14410.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	83.09	82.35
CDX97572	Canola	plasma membrane	83.68	81.27
Bra027340.1-P	Field mustard	plasma membrane	83.68	81.27
CDY33222	Canola	golgi, peroxisome, plasma membrane	82.79	77.5
CDY39113	Canola	plasma membrane	82.2	76.94
AT1G53660.3	Thale cress	mitochondrion, plasma membrane	76.56	73.71
GSMUA_Achr6P19870_001	Banana	golgi, plasma membrane, vacuole	73.59	71.47
GSMUA_Achr9P30380_001	Banana	plasma membrane	65.88	70.93
Os08t0135100-01	Rice	peroxisome, plasma membrane, vacuole	70.33	67.71
Zm00001d024708_P001	Maize	plasma membrane	69.73	66.38
EES14504	Sorghum	golgi, peroxisome, plasma membrane	70.33	65.29
TraesCS7A01G309100.1	Wheat	plasma membrane	67.66	63.33
TraesCS7D01G305800.1	Wheat	plasma membrane	67.36	62.88
TraesCS7B01G209100.1	Wheat	plasma membrane	67.06	62.78
HORVU7Hr1G073550.1	Barley	plastid	68.55	57.04
PGSC0003DMT400062384	Potato	plasma membrane	41.25	39.71
PGSC0003DMT400052756	Potato	plasma membrane	39.76	37.85
PGSC0003DMT400040993	Potato	plasma membrane	38.58	37.04
PGSC0003DMT400064764	Potato	plasma membrane	28.19	35.71
PGSC0003DMT400021093	Potato	endoplasmic reticulum, plasma membrane	25.22	27.42
PGSC0003DMT400033107	Potato	endoplasmic reticulum, plasma membrane	21.36	27.38
PGSC0003DMT400069910	Potato	endoplasmic reticulum, plasma membrane	23.44	25.82
PGSC0003DMT400076739	Potato	plasma membrane	23.44	25.48
PGSC0003DMT400045308	Potato	plasma membrane	23.74	23.53
PGSC0003DMT400003706	Potato	plasma membrane	39.47	23.29
PGSC0003DMT400009998	Potato	golgi, mitochondrion, peroxisome, plastid	23.44	22.19
PGSC0003DMT400020171	Potato	cytosol	14.84	14.79
PGSC0003DMT400042052	Potato	cytosol, extracellular, nucleus	1.19	1.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400054846	EnsemblPlantsGene:PGSC0003DMG400021291	EntrezGene:102603783	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Sugar_P_trans_dom	PANTHER:PTHR11132	PANTHER:PTHR11132:SF235	PFAM:PF03151	PGSC:PGSC0003DMG400021291	RefSeq:XP_006360018.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000296531F	UniProt:M1BWZ3	MapMan:24.2.1.1.10

Description

Triose phosphate/phosphate translocator, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400021291]

Coordinates

chr10:+:2635414..2641846

Molecular Weight (calculated)

37110.8 Da

IEP (calculated)

8.623

GRAVY (calculated)

0.862

Length

337 amino acids

Sequence
(BLAST)

001: MADRVRRVMS EGVLTYAYIL LYISLSSGQI FFNKWVLSSK EINFPYPLAL TLLHMVFSSV LCFVLTKVLK IMKVEEGMTL DIYISSVIPI GAMFAMTLWL
101: GNTAYLYISV SFAQMLKAIM PVAVFILGVA AGLEMMSCRM LLIMSVISFG VLVASYGEIN INWVGVIYQM GGVVGEALRL IFMEILVKRK GLKLNPISVM
201: YYVSPCSALC LLVPWIFLEK PKMDEELTWS FHPLVLTLNC ICTFALNLSV FLVISHTSAL TIRVAGVVKD WVVVLLSALL FADTKLTLIN LCGYAIAIAG
301: VAAYNSHKLK KEATRVSSDE SQATSSIPLV SSSTSNA

Best Arabidopsis Sequence Match ( AT3G14410.1 )
(BLAST)

001: MADRSKGFMR AEFVTYAYIL LYIALSSGQI FFNKWVLSSK EINFPYPLGL TLLHMIFSSV LCFLLTKVLK IVKVEEGMTL EIYVTSVIPI GAMFAMTLWL
101: GNTAYLYISV AFAQMLKAIM PVAVFILGVA AGLEMMSCRM LLIMSIISFG VLVASYGELN INWIGVVYQM GGVVGEALRL IFMELLVKRK GIKLNPISLM
201: YYVSPCSAIC LFVPWIFLEK SKIDGNGPWN FHFVVLTLNS LCTFALNLSV FLVISHTSAL TIRVAGVVKD WVVVLVSALL FADTKLTIIN LFGYAIAIAG
301: VAAYNNHKLK KEASKVVTTE TPGDAESIPL VSQGNTNTER

Arabidopsis Description

Probable sugar phosphate/phosphate translocator At3g14410 [Source:UniProtKB/Swiss-Prot;Acc:Q94EI9]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.