Factsheet for PGSC0003DMT400073746

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042580.1.1	Tomato	extracellular	79.53	82.42
VIT_09s0018g00520.t01	Wine grape	extracellular	53.22	54.17
KRH47324	Soybean	extracellular	49.12	49.41
GSMUA_Achr7P05270_001	Banana	extracellular	45.61	45.35
TraesCS5B01G362200.1	Wheat	extracellular, plasma membrane, vacuole	43.86	44.91
TraesCS5D01G369100.1	Wheat	plasma membrane	44.44	43.43
Zm00001d021391_P001	Maize	extracellular	41.52	42.26
KXG36173	Sorghum	extracellular	40.94	42.17
Os09t0557900-01	Rice	extracellular	40.35	41.07
PGSC0003DMT400003642	Potato	extracellular, golgi	27.49	26.7
PGSC0003DMT400003639	Potato	extracellular	23.39	25.16

Protein Annotations

EntrezGene:102583063	Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0022900	InterPro:IPR003245	InterPro:IPR008972	UniProt:M1CSL2
PFAM:PD003122	PFAM:PF02298	EnsemblPlantsGene:PGSC0003DMG400028648	PGSC:PGSC0003DMG400028648	EnsemblPlants:PGSC0003DMT400073746	PFscan:PS51485
PANTHER:PTHR33021	PANTHER:PTHR33021:SF13	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000296D664	RefSeq:XP_006346607.1	SEG:seg	:	:	:

Description

Blue copper [Source:PGSC_GENE;Acc:PGSC0003DMG400028648]

Coordinates

chr12:+:49615995..49617365

Molecular Weight (calculated)

18575.4 Da

IEP (calculated)

8.329

GRAVY (calculated)

0.257

Length

171 amino acids

Sequence
(BLAST)

001: MALHVFILIV TATIATTVSA TDHIVGANKG WNPGINYTIW SNNQTFYVGD FISFRYQKAQ HNVLQVDKVG YNNCTIEGAL GNWSSGKDFI LLDKSKRYYF
101: ICGIGGCSNG MKVSVLVHSI SPPPRSDVVS AVHSSEKSAA PVTFHGNFGS ILVFVGLSMT ICMLQDLMSF G

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.