Factsheet for Solyc12g042580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073746	Potato	extracellular	82.42	79.53
Solyc03g117560.2.1	Tomato	extracellular	53.94	53.61
VIT_09s0018g00520.t01	Wine grape	extracellular	52.73	51.79
KRH47324	Soybean	extracellular	51.52	50.0
Os09t0557900-01	Rice	extracellular	45.45	44.64
GSMUA_Achr7P05270_001	Banana	extracellular	45.45	43.6
KXG36173	Sorghum	extracellular	43.64	43.37
Zm00001d021391_P001	Maize	extracellular	43.64	42.86
TraesCS5B01G362200.1	Wheat	extracellular, plasma membrane, vacuole	43.03	42.52
TraesCS5D01G369100.1	Wheat	plasma membrane	44.24	41.71
Solyc02g088380.2.1	Tomato	extracellular	24.85	24.55

Protein Annotations

Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0022900	GO:GO:0046658	InterPro:IPR003245
InterPro:IPR008972	UniProt:K4DF49	PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021
PANTHER:PTHR33021:SF13	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g042580.1	EnsemblPlants:Solyc12g042580.1.1
TMHMM:TMhelix	UniParc:UPI000276AB2F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:39939170..39940406

Molecular Weight (calculated)

18201.8 Da

IEP (calculated)

8.895

GRAVY (calculated)

0.153

Length

165 amino acids

Sequence
(BLAST)

001: MALHVFFLIV TTAIVATTIS ATDHIVGANK GWNPGINYTI WSNNQTFYIG DFISFRYQKT QHNVLQVDKV GYNNCTIEGA LRNWSSGKDF ILLDKSKRYY
101: FICGIGGCSN GMKVSVLVHP LSPPPRSDAV SAVHSSEKSD APVTFHGNFG SILVFVGLSY VCFRI

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.