Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 4
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G12880.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_14s0108g01320.t01 | Wine grape | extracellular | 55.68 | 61.64 |
KRH18432 | Soybean | extracellular | 52.84 | 55.03 |
CDY26419 | Canola | extracellular | 50.57 | 54.94 |
Bra006297.1-P | Field mustard | extracellular | 50.57 | 52.35 |
CDX78627 | Canola | extracellular | 50.57 | 52.35 |
CDX70608 | Canola | extracellular | 50.0 | 51.76 |
CDX96917 | Canola | extracellular | 39.77 | 50.36 |
CDY14895 | Canola | extracellular | 39.77 | 50.36 |
Bra035997.1-P | Field mustard | extracellular | 39.2 | 49.64 |
AT5G15350.1 | Thale cress | extracellular | 47.73 | 48.84 |
AT3G01070.1 | Thale cress | extracellular | 43.75 | 46.11 |
Bra021481.1-P | Field mustard | extracellular | 46.02 | 46.02 |
CDY55798 | Canola | extracellular | 46.02 | 46.02 |
CDY34699 | Canola | extracellular | 45.45 | 45.45 |
AT4G12880.1 | Thale cress | extracellular | 35.8 | 44.68 |
CDY43265 | Canola | plasma membrane | 43.75 | 43.5 |
CDY37547 | Canola | extracellular | 41.48 | 41.24 |
Bra039148.1-P | Field mustard | extracellular | 41.48 | 41.24 |
PGSC0003DMT400003639 | Potato | extracellular | 34.09 | 37.74 |
TraesCS3B01G334700.1 | Wheat | extracellular | 20.45 | 32.73 |
GSMUA_Achr4P23310_001 | Banana | extracellular | 30.68 | 31.76 |
EER90853 | Sorghum | extracellular | 30.11 | 31.55 |
TraesCS5B01G400400.1 | Wheat | extracellular, plasma membrane | 29.55 | 31.52 |
TraesCS5A01G395600.1 | Wheat | extracellular, plasma membrane | 28.98 | 30.91 |
HORVU5Hr1G096540.1 | Barley | plasma membrane | 27.84 | 29.34 |
GSMUA_Achr4P23300_001 | Banana | extracellular | 28.98 | 29.31 |
TraesCS3D01G300100.1 | Wheat | extracellular | 28.41 | 29.07 |
Os03t0758500-01 | Rice | plasma membrane | 26.7 | 28.48 |
GSMUA_Achr9P09440_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 26.7 | 27.98 |
PGSC0003DMT400073746 | Potato | extracellular | 26.7 | 27.49 |
TraesCS3A01G301900.1 | Wheat | extracellular | 26.7 | 27.17 |
HORVU3Hr1G074100.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 26.7 | 26.4 |
TraesCS2D01G261600.1 | Wheat | cytosol, extracellular, mitochondrion, peroxisome | 26.14 | 24.34 |
Zm00001d043357_P001 | Maize | extracellular | 25.57 | 23.32 |
TraesCS2A01G262400.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion, peroxisome | 25.57 | 23.2 |
Os07t0112700-01 | Rice | extracellular | 23.3 | 23.03 |
TraesCS2B01G279700.1 | Wheat | unclear | 25.0 | 22.45 |
TraesCS5D01G404900.1 | Wheat | plastid | 30.11 | 21.9 |
HORVU2Hr1G063510.2 | Barley | extracellular, mitochondrion | 24.43 | 21.83 |
GSMUA_Achr2P13520_001 | Banana | vacuole | 27.27 | 21.72 |
Zm00001d018641_P001 | Maize | extracellular | 23.86 | 21.54 |
KXG33437 | Sorghum | plastid | 25.0 | 21.05 |
EER95743 | Sorghum | extracellular | 23.3 | 19.81 |
Protein Annotations
EntrezGene:102599525 | Gene3D:2.60.40.420 | MapMan:35.1 | InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 |
InterPro:IPR003245 | InterPro:IPR008972 | UniProt:M0ZM23 | PFAM:PD003122 | PFAM:PF02298 | EnsemblPlantsGene:PGSC0003DMG400001437 |
PGSC:PGSC0003DMG400001437 | EnsemblPlants:PGSC0003DMT400003642 | PFscan:PS51485 | PANTHER:PTHR33021 | PANTHER:PTHR33021:SF63 | InterPro:Phytocyanin_dom |
SUPFAM:SSF49503 | TMHMM:TMhelix | UniParc:UPI00029692B6 | RefSeq:XP_006338413.1 | SEG:seg | : |
Description
Blue (Type 1) copper domain [Source:PGSC_GENE;Acc:PGSC0003DMG400001437]
Coordinates
chr2:+:45903478..45906133
Molecular Weight (calculated)
20094.1 Da
IEP (calculated)
9.039
GRAVY (calculated)
-0.118
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVRRRNFG WPTMAVVLTC ALLVMLPQVY SVRYIVGSRF GWTNNVNYTN WAKDKHFYNE DWLFFVYDRN QMNVLELNKT DYESCNTDHP LHNWTTGAGR
101: DVVPLNVTKT YYFASGKGYC YGGMKVAIHV EKAPPPPKAA PVHSSSTNLL NSFKGQIMIP ALFATAAAWD AFLLLW
101: DVVPLNVTKT YYFASGKGYC YGGMKVAIHV EKAPPPPKAA PVHSSSTNLL NSFKGQIMIP ALFATAAAWD AFLLLW
001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
Arabidopsis Description
ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.