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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 4
  • mitochondrion 1
  • plastid 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G12880.1 PGSC0003DMT400075691 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_14s0108g01320.t01 Wine grape extracellular 55.68 61.64
KRH18432 Soybean extracellular 52.84 55.03
CDY26419 Canola extracellular 50.57 54.94
Bra006297.1-P Field mustard extracellular 50.57 52.35
CDX78627 Canola extracellular 50.57 52.35
CDX70608 Canola extracellular 50.0 51.76
CDX96917 Canola extracellular 39.77 50.36
CDY14895 Canola extracellular 39.77 50.36
Bra035997.1-P Field mustard extracellular 39.2 49.64
AT5G15350.1 Thale cress extracellular 47.73 48.84
AT3G01070.1 Thale cress extracellular 43.75 46.11
Bra021481.1-P Field mustard extracellular 46.02 46.02
CDY55798 Canola extracellular 46.02 46.02
CDY34699 Canola extracellular 45.45 45.45
AT4G12880.1 Thale cress extracellular 35.8 44.68
CDY43265 Canola plasma membrane 43.75 43.5
CDY37547 Canola extracellular 41.48 41.24
Bra039148.1-P Field mustard extracellular 41.48 41.24
PGSC0003DMT400003639 Potato extracellular 34.09 37.74
TraesCS3B01G334700.1 Wheat extracellular 20.45 32.73
GSMUA_Achr4P23310_001 Banana extracellular 30.68 31.76
EER90853 Sorghum extracellular 30.11 31.55
TraesCS5B01G400400.1 Wheat extracellular, plasma membrane 29.55 31.52
TraesCS5A01G395600.1 Wheat extracellular, plasma membrane 28.98 30.91
HORVU5Hr1G096540.1 Barley plasma membrane 27.84 29.34
GSMUA_Achr4P23300_001 Banana extracellular 28.98 29.31
TraesCS3D01G300100.1 Wheat extracellular 28.41 29.07
Os03t0758500-01 Rice plasma membrane 26.7 28.48
GSMUA_Achr9P09440_001 Banana endoplasmic reticulum, extracellular, plasma membrane 26.7 27.98
PGSC0003DMT400073746 Potato extracellular 26.7 27.49
TraesCS3A01G301900.1 Wheat extracellular 26.7 27.17
HORVU3Hr1G074100.1 Barley endoplasmic reticulum, plasma membrane, vacuole 26.7 26.4
TraesCS2D01G261600.1 Wheat cytosol, extracellular, mitochondrion, peroxisome 26.14 24.34
Zm00001d043357_P001 Maize extracellular 25.57 23.32
TraesCS2A01G262400.1 Wheat endoplasmic reticulum, extracellular, mitochondrion, peroxisome 25.57 23.2
Os07t0112700-01 Rice extracellular 23.3 23.03
TraesCS2B01G279700.1 Wheat unclear 25.0 22.45
TraesCS5D01G404900.1 Wheat plastid 30.11 21.9
HORVU2Hr1G063510.2 Barley extracellular, mitochondrion 24.43 21.83
GSMUA_Achr2P13520_001 Banana vacuole 27.27 21.72
Zm00001d018641_P001 Maize extracellular 23.86 21.54
KXG33437 Sorghum plastid 25.0 21.05
EER95743 Sorghum extracellular 23.3 19.81
Protein Annotations
EntrezGene:102599525Gene3D:2.60.40.420MapMan:35.1InterPro:CupredoxinGO:GO:0003674GO:GO:0003824
GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0022900
InterPro:IPR003245InterPro:IPR008972UniProt:M0ZM23PFAM:PD003122PFAM:PF02298EnsemblPlantsGene:PGSC0003DMG400001437
PGSC:PGSC0003DMG400001437EnsemblPlants:PGSC0003DMT400003642PFscan:PS51485PANTHER:PTHR33021PANTHER:PTHR33021:SF63InterPro:Phytocyanin_dom
SUPFAM:SSF49503TMHMM:TMhelixUniParc:UPI00029692B6RefSeq:XP_006338413.1SEG:seg:
Description
Blue (Type 1) copper domain [Source:PGSC_GENE;Acc:PGSC0003DMG400001437]
Coordinates
chr2:+:45903478..45906133
Molecular Weight (calculated)
20094.1 Da
IEP (calculated)
9.039
GRAVY (calculated)
-0.118
Length
176 amino acids
Sequence
(BLAST)
001: MEVVRRRNFG WPTMAVVLTC ALLVMLPQVY SVRYIVGSRF GWTNNVNYTN WAKDKHFYNE DWLFFVYDRN QMNVLELNKT DYESCNTDHP LHNWTTGAGR
101: DVVPLNVTKT YYFASGKGYC YGGMKVAIHV EKAPPPPKAA PVHSSSTNLL NSFKGQIMIP ALFATAAAWD AFLLLW
Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)
001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
Arabidopsis Description
ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.