Factsheet for GSMUA_Achr4P23300_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13520_001	Banana	vacuole	67.82	53.39
GSMUA_Achr9P09440_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	50.57	52.38
EER90853	Sorghum	extracellular	48.28	50.0
Os03t0758500-01	Rice	plasma membrane	47.13	49.7
TraesCS5A01G395600.1	Wheat	extracellular, plasma membrane	46.55	49.09
TraesCS5B01G400400.1	Wheat	extracellular, plasma membrane	46.55	49.09
HORVU5Hr1G096540.1	Barley	plasma membrane	46.55	48.5
Os07t0112700-01	Rice	extracellular	41.95	41.01
GSMUA_Achr4P23310_001	Banana	extracellular	39.66	40.59
TraesCS2D01G261600.1	Wheat	cytosol, extracellular, mitochondrion, peroxisome	40.8	37.57
Zm00001d018641_P001	Maize	extracellular	40.8	36.41
AT4G12880.1	Thale cress	extracellular	29.31	36.17
TraesCS2A01G262400.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	40.23	36.08
Bra035997.1-P	Field mustard	extracellular	28.74	35.97
CDX96917	Canola	extracellular	28.74	35.97
CDY14895	Canola	extracellular	28.74	35.97
TraesCS2B01G279700.1	Wheat	unclear	40.23	35.71
EER95743	Sorghum	extracellular	41.38	34.78
HORVU2Hr1G063510.2	Barley	extracellular, mitochondrion	39.08	34.52
AT3G01070.1	Thale cress	extracellular	32.18	33.53
CDY34699	Canola	extracellular	33.91	33.52
Bra021481.1-P	Field mustard	extracellular	33.91	33.52
TraesCS5D01G404900.1	Wheat	plastid	46.55	33.47
VIT_14s0108g01320.t01	Wine grape	extracellular	30.46	33.33
CDY55798	Canola	extracellular	33.33	32.95
KRH18432	Soybean	extracellular	31.61	32.54
Solyc02g088380.2.1	Tomato	extracellular	31.03	32.34
CDY43265	Canola	plasma membrane	32.76	32.2
CDY37547	Canola	extracellular	32.76	32.2
Bra039148.1-P	Field mustard	extracellular	32.18	31.64
CDY26419	Canola	extracellular	29.31	31.48
PGSC0003DMT400003639	Potato	extracellular	28.74	31.45
AT2G27035.1	Thale cress	extracellular	29.31	31.29
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	30.46	30.11
CDX83251	Canola	extracellular	28.74	29.94
CDY38541	Canola	extracellular	28.74	29.94
AT5G15350.1	Thale cress	extracellular	29.31	29.65
PGSC0003DMT400003642	Potato	extracellular, golgi	29.31	28.98
CDX78627	Canola	extracellular	28.16	28.82
Bra006297.1-P	Field mustard	extracellular	28.16	28.82
CDX70608	Canola	extracellular	27.59	28.24
Bra000527.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	27.01	28.14
GSMUA_Achr7P05270_001	Banana	extracellular	26.44	26.74
KRG89877	Soybean	extracellular	24.71	26.38
KRG93595	Soybean	extracellular	25.86	25.57
KRH73474	Soybean	extracellular	23.56	22.91
KRH18434	Soybean	extracellular, plasma membrane	22.99	22.86
KRH73475	Soybean	extracellular	25.29	22.34

Protein Annotations

Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	EnsemblPlantsGene:GSMUA_Achr4G23300_001
EnsemblPlants:GSMUA_Achr4P23300_001	EnsemblPlants:GSMUA_Achr4T23300_001	InterPro:IPR003245	InterPro:IPR008972	UniProt:M0SRE1	PFAM:PD003122
PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021	PANTHER:PTHR33021:SF56	InterPro:Phytocyanin_dom	SUPFAM:SSF49503
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002951EB0	SEG:seg	:	:

Description

Putative Lamin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G23300_001]

Coordinates

chr4:+:23440486..23441285

Molecular Weight (calculated)

19127.0 Da

IEP (calculated)

8.306

GRAVY (calculated)

0.006

Length

174 amino acids

Sequence
(BLAST)

001: MAGMQPQEKL RGGAVAALPF FLLLIMVSHQ LVSADRFSVG DSKGWNPNVN YTVWVEKQKP FHVGDWLVFY YQSGMADVVQ VDEAGYNKCD ASNPISNYSK
101: GRSYAFELNH TGRYYFICSR GYCYGGMRLA IAVEHLPPPS PPPSSLKDSS AAAPCRLLAL TASLLAAALF PFHL

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.