Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12880.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P23300_001 | Banana | extracellular | 52.38 | 50.57 |
| TraesCS5B01G400400.1 | Wheat | extracellular, plasma membrane | 45.83 | 46.67 |
| TraesCS5A01G395600.1 | Wheat | extracellular, plasma membrane | 45.83 | 46.67 |
| Os03t0758500-01 | Rice | plasma membrane | 45.83 | 46.67 |
| EER90853 | Sorghum | extracellular | 45.83 | 45.83 |
| HORVU5Hr1G096540.1 | Barley | plasma membrane | 45.24 | 45.51 |
| Os07t0112700-01 | Rice | extracellular | 47.02 | 44.38 |
| Zm00001d018641_P001 | Maize | extracellular | 49.4 | 42.56 |
| GSMUA_Achr4P23310_001 | Banana | extracellular | 42.86 | 42.35 |
| TraesCS2D01G261600.1 | Wheat | cytosol, extracellular, mitochondrion, peroxisome | 47.02 | 41.8 |
| TraesCS2A01G262400.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion, peroxisome | 47.02 | 40.72 |
| EER95743 | Sorghum | extracellular | 49.4 | 40.1 |
| TraesCS2B01G279700.1 | Wheat | unclear | 46.43 | 39.8 |
| GSMUA_Achr2P13520_001 | Banana | vacuole | 50.6 | 38.46 |
| HORVU2Hr1G063510.2 | Barley | extracellular, mitochondrion | 41.67 | 35.53 |
| VIT_14s0108g01320.t01 | Wine grape | extracellular | 30.95 | 32.7 |
| TraesCS5D01G404900.1 | Wheat | plastid | 45.83 | 31.82 |
| PGSC0003DMT400003639 | Potato | extracellular | 29.76 | 31.45 |
| CDY37547 | Canola | extracellular | 32.74 | 31.07 |
| CDY55798 | Canola | extracellular | 32.14 | 30.68 |
| CDY34699 | Canola | extracellular | 32.14 | 30.68 |
| Bra021481.1-P | Field mustard | extracellular | 32.14 | 30.68 |
| Solyc02g088380.2.1 | Tomato | extracellular | 30.36 | 30.54 |
| CDY43265 | Canola | plasma membrane | 32.14 | 30.51 |
| Bra039148.1-P | Field mustard | extracellular | 32.14 | 30.51 |
| AT2G27035.1 | Thale cress | extracellular | 29.17 | 30.06 |
| AT3G01070.1 | Thale cress | extracellular | 29.76 | 29.94 |
| AT4G12880.1 | Thale cress | extracellular | 25.0 | 29.79 |
| VIT_14s0108g01310.t01 | Wine grape | extracellular, plasma membrane | 30.95 | 29.55 |
| Bra035997.1-P | Field mustard | extracellular | 24.4 | 29.5 |
| CDY14895 | Canola | extracellular | 24.4 | 29.5 |
| CDX96917 | Canola | extracellular | 24.4 | 29.5 |
| KRH18432 | Soybean | extracellular | 28.57 | 28.4 |
| KRG89877 | Soybean | extracellular | 26.19 | 26.99 |
| Bra000527.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 26.79 | 26.95 |
| CDY38541 | Canola | extracellular | 26.79 | 26.95 |
| CDX83251 | Canola | extracellular | 26.79 | 26.95 |
| PGSC0003DMT400003642 | Potato | extracellular, golgi | 27.98 | 26.7 |
| GSMUA_Achr7P05270_001 | Banana | extracellular | 26.79 | 26.16 |
| CDY26419 | Canola | extracellular | 24.4 | 25.31 |
| Bra006297.1-P | Field mustard | extracellular | 25.6 | 25.29 |
| CDX70608 | Canola | extracellular | 25.6 | 25.29 |
| CDX78627 | Canola | extracellular | 25.6 | 25.29 |
| AT5G15350.1 | Thale cress | extracellular | 25.0 | 24.42 |
| KRH73474 | Soybean | extracellular | 25.6 | 24.02 |
| KRH18434 | Soybean | extracellular, plasma membrane | 22.02 | 21.14 |
| KRH73475 | Soybean | extracellular | 24.4 | 20.81 |
| KRG93595 | Soybean | extracellular | 21.43 | 20.45 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:35.1 | InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 | EnsemblPlantsGene:GSMUA_Achr9G09440_001 |
| EnsemblPlants:GSMUA_Achr9P09440_001 | EnsemblPlants:GSMUA_Achr9T09440_001 | InterPro:IPR003245 | InterPro:IPR008972 | UniProt:M0TYV3 | PFAM:PD003122 |
| PFAM:PF02298 | PFscan:PS51485 | PANTHER:PTHR33021 | PANTHER:PTHR33021:SF56 | InterPro:Phytocyanin_dom | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | UniParc:UPI000295C5E8 | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G09440_001]
Coordinates
chr9:-:6147536..6148435
Molecular Weight (calculated)
18484.1 Da
IEP (calculated)
8.886
GRAVY (calculated)
0.029
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKALLLVLV CVSYHLSCAA AFNRFSVGDE KGWIPGVNYT IWEKKHRPFH VGDWLVFYYQ PRTADVVRVD EDAYDKCDAS NPISNYSKGR NYAFELNHTG
101: RYYFICSYGY CYDGMKLSIL VEPLTSPSAP LSAKKKSSAS AAAAPPRALT STAALAATLL AAALLRVL
101: RYYFICSYGY CYDGMKLSIL VEPLTSPSAP LSAKKKSSAS AAAAPPRALT STAALAATLL AAALLRVL
001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
Arabidopsis Description
ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.