Factsheet for TraesCS2B01G279700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	endoplasmic reticulum, extracellular, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	peroxisome

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G12880.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G12880.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G262400.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	93.88	94.85
TraesCS2D01G261600.1	Wheat	cytosol, extracellular, mitochondrion, peroxisome	90.82	94.18
HORVU2Hr1G063510.2	Barley	extracellular, mitochondrion	76.02	75.63
Os07t0112700-01	Rice	extracellular	61.73	67.98
Zm00001d018641_P001	Maize	extracellular	60.71	61.03
EER95743	Sorghum	extracellular	57.14	54.11
GSMUA_Achr9P09440_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	39.8	46.43
TraesCS5B01G400400.1	Wheat	extracellular, plasma membrane	34.69	41.21
GSMUA_Achr4P23300_001	Banana	extracellular	35.71	40.23
TraesCS3B01G334700.1	Wheat	extracellular	19.9	35.45
CDX96917	Canola	extracellular	23.98	33.81
CDY14895	Canola	extracellular	23.98	33.81
Bra035997.1-P	Field mustard	extracellular	23.47	33.09
GSMUA_Achr2P13520_001	Banana	vacuole	36.73	32.58
AT2G27035.1	Thale cress	extracellular	26.02	31.29
AT4G12880.1	Thale cress	extracellular	22.45	31.21
VIT_14s0108g01320.t01	Wine grape	extracellular	24.49	30.19
PGSC0003DMT400003639	Potato	extracellular	24.49	30.19
TraesCS5B01G362200.1	Wheat	extracellular, plasma membrane, vacuole	25.51	29.94
AT3G01070.1	Thale cress	extracellular	25.0	29.34
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	25.51	28.41
KRH18432	Soybean	extracellular	24.49	28.4
CDY26419	Canola	extracellular	22.96	27.78
Solyc02g088380.2.1	Tomato	extracellular	23.47	27.54
AT5G15350.1	Thale cress	extracellular	23.98	27.33
Bra039148.1-P	Field mustard	extracellular	24.49	27.12
CDX78627	Canola	extracellular	23.47	27.06
Bra006297.1-P	Field mustard	extracellular	23.47	27.06
CDY34699	Canola	extracellular	23.98	26.7
Bra021481.1-P	Field mustard	extracellular	23.98	26.7
CDY55798	Canola	extracellular	23.98	26.7
CDY43265	Canola	plasma membrane	23.98	26.55
CDY37547	Canola	extracellular	23.98	26.55
CDX70608	Canola	extracellular	22.96	26.47
CDX83251	Canola	extracellular	22.45	26.35
Bra000527.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	21.94	25.75
CDY38541	Canola	extracellular	21.94	25.75
KRH73474	Soybean	extracellular	23.47	25.7
PGSC0003DMT400003642	Potato	extracellular, golgi	22.45	25.0
KRG89877	Soybean	extracellular	20.41	24.54
KRH73475	Soybean	extracellular	23.47	23.35
KRG93595	Soybean	extracellular	20.92	23.3
KRH18434	Soybean	extracellular, plasma membrane	20.41	22.86

Protein Annotations

EnsemblPlants:TraesCS2B01G279700.1	EnsemblPlantsGene:TraesCS2B01G279700	Gene3D:2.60.40.420	GO:GO:0003674	GO:GO:0003824	GO:GO:0009055
InterPro:Cupredoxin	InterPro:IPR003245	InterPro:IPR008972	InterPro:Phytocyanin_dom	PANTHER:PTHR33021	PANTHER:PTHR33021:SF47
PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49503
TIGR:cd11017	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2B:+:385889022..385890028

Molecular Weight (calculated)

20720.5 Da

IEP (calculated)

9.278

GRAVY (calculated)

-0.183

Length

196 amino acids

Sequence
(BLAST)

001: MAANPDREVC HRAGRGGKML LPVMAVLAAV VLASLPSAAV ATNYTVGDEK GWNPKVDYTS WVKKHRPFYK GDWLLFEYQN GRSDVVQVDE VGYDNCDKES
101: AISSHSKGTS YAFQLKEAKD YFFICSYGYC YSGMKLAVTA KKGPASSSPD SGSSSSSSSS PAAKSSSKSA APPIAARNAA PLAAAVGAAA MLLRML

Best Arabidopsis Sequence Match ( AT2G27035.1 )
(BLAST)

001: MMGKYLWALV YVTVMILIIV VEVESSLHRV GGGRYTWNSD VNFSDWANHQ RFYSGDWLYF GFNRTRHNIL QVNKSSYEQC VDNDYIFNIT RGGRDVFQLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL

Arabidopsis Description

ENODL20Early nodulin-like protein 20 [Source:UniProtKB/TrEMBL;Acc:F4IVN9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.