Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12880.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G300100.1 | Wheat | extracellular | 93.64 | 59.88 |
| TraesCS3A01G301900.1 | Wheat | extracellular | 84.55 | 53.76 |
| HORVU3Hr1G074100.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 80.0 | 49.44 |
| GSMUA_Achr4P23310_001 | Banana | extracellular | 54.55 | 35.29 |
| Zm00001d043357_P001 | Maize | extracellular | 59.09 | 33.68 |
| KXG33437 | Sorghum | plastid | 60.91 | 32.06 |
| Bra035997.1-P | Field mustard | extracellular | 39.09 | 30.94 |
| CDX96917 | Canola | extracellular | 39.09 | 30.94 |
| CDY14895 | Canola | extracellular | 39.09 | 30.94 |
| AT4G12880.1 | Thale cress | extracellular | 39.09 | 30.5 |
| AT3G01070.1 | Thale cress | extracellular | 40.0 | 26.35 |
| KRH18432 | Soybean | extracellular | 40.0 | 26.04 |
| TraesCS5B01G400400.1 | Wheat | extracellular, plasma membrane | 38.18 | 25.45 |
| CDY26419 | Canola | extracellular | 37.27 | 25.31 |
| CDY37547 | Canola | extracellular | 38.18 | 23.73 |
| Solyc02g088380.2.1 | Tomato | extracellular | 35.45 | 23.35 |
| CDY34699 | Canola | extracellular | 37.27 | 23.3 |
| CDY55798 | Canola | extracellular | 37.27 | 23.3 |
| Bra021481.1-P | Field mustard | extracellular | 37.27 | 23.3 |
| VIT_14s0108g01320.t01 | Wine grape | extracellular | 33.64 | 23.27 |
| Bra039148.1-P | Field mustard | extracellular | 37.27 | 23.16 |
| AT5G15350.1 | Thale cress | extracellular | 35.45 | 22.67 |
| CDY43265 | Canola | plasma membrane | 36.36 | 22.6 |
| CDX78627 | Canola | extracellular | 34.55 | 22.35 |
| Bra006297.1-P | Field mustard | extracellular | 34.55 | 22.35 |
| CDX70608 | Canola | extracellular | 34.55 | 22.35 |
| PGSC0003DMT400003639 | Potato | extracellular | 31.82 | 22.01 |
| KRG89877 | Soybean | extracellular | 31.82 | 21.47 |
| VIT_14s0108g01310.t01 | Wine grape | extracellular, plasma membrane | 33.64 | 21.02 |
| KRH73474 | Soybean | extracellular | 33.64 | 20.67 |
| PGSC0003DMT400003642 | Potato | extracellular, golgi | 32.73 | 20.45 |
| TraesCS2B01G279700.1 | Wheat | unclear | 35.45 | 19.9 |
| CDY38541 | Canola | extracellular | 30.0 | 19.76 |
| CDX83251 | Canola | extracellular | 30.0 | 19.76 |
| AT2G27035.1 | Thale cress | extracellular | 29.09 | 19.63 |
| KRH18434 | Soybean | extracellular, plasma membrane | 30.0 | 18.86 |
| KRH73475 | Soybean | extracellular | 33.64 | 18.78 |
| Bra000527.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 28.18 | 18.56 |
| TraesCS5B01G362200.1 | Wheat | extracellular, plasma membrane, vacuole | 27.27 | 17.96 |
| KRG93595 | Soybean | extracellular | 28.18 | 17.61 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G334700.1 | EnsemblPlantsGene:TraesCS3B01G334700 | Gene3D:2.60.40.420 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0009055 |
| InterPro:Cupredoxin | InterPro:IPR003245 | InterPro:IPR008972 | InterPro:Phytocyanin_dom | PANTHER:PTHR33021 | PANTHER:PTHR33021:SF43 |
| PFAM:PD003122 | PFAM:PF02298 | PFscan:PS51485 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF49503 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:540732546..540733071
Molecular Weight (calculated)
12549.9 Da
IEP (calculated)
7.592
GRAVY (calculated)
-0.140
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTPNLPLL LLATFLLLAA APAPSAAEKF VVGDKKNWAA NVNYTTWPDQ YHFHVGDWLQ FNYARDMYDV VQVANQTAYD KCDPTNPLVS YNRGRGFVFQ
101: LNHTGRYYFI
101: LNHTGRYYFI
001: MGRSMVLISA VVLAFLVAAP IPEVTAKKYL VGDKKFWNPN INYTLWAQGK HFYVGDWLYF VFYRDQHNIL EVNKADYEKC ISNRPIRNYT RGAGRDIVPL
101: YETRRYYLLD GRGGCVQGMK LDVLVETPPP PPPFTPPPPA Q
101: YETRRYYLLD GRGGCVQGMK LDVLVETPPP PPPFTPPPPA Q
Arabidopsis Description
ENODL19At4g12880 [Source:UniProtKB/TrEMBL;Acc:Q9STZ8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.