CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G334700.1	Wheat	extracellular	32.06	60.91
Zm00001d043357_P001	Maize	extracellular	52.63	56.99
TraesCS3D01G300100.1	Wheat	extracellular	43.54	52.91
TraesCS3A01G301900.1	Wheat	extracellular	41.63	50.29
HORVU3Hr1G074100.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	40.67	47.75
GSMUA_Achr4P23310_001	Banana	extracellular	38.76	47.65
EER90853	Sorghum	extracellular	29.19	36.31
AT3G01070.1	Thale cress	extracellular	27.27	34.13
Solyc02g088380.2.1	Tomato	extracellular	27.27	34.13
Bra039148.1-P	Field mustard	extracellular	28.23	33.33
AT4G12880.1	Thale cress	extracellular	22.49	33.33
PGSC0003DMT400003639	Potato	extracellular	25.36	33.33
Bra021481.1-P	Field mustard	extracellular	27.75	32.95
CDY34699	Canola	extracellular	27.75	32.95
CDY55798	Canola	extracellular	27.75	32.95
CDY37547	Canola	extracellular	27.75	32.77
CDY43265	Canola	plasma membrane	27.27	32.2
CDY14895	Canola	extracellular	20.57	30.94
Bra035997.1-P	Field mustard	extracellular	20.57	30.94
CDX96917	Canola	extracellular	20.57	30.94
KRH18432	Soybean	extracellular	24.88	30.77
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	25.36	30.11
VIT_14s0108g01320.t01	Wine grape	extracellular	22.01	28.93
KXG36173	Sorghum	extracellular	22.97	28.92
CDY38541	Canola	extracellular	22.49	28.14
CDX83251	Canola	extracellular	22.49	28.14
CDY26419	Canola	extracellular	21.53	27.78
KRG89877	Soybean	extracellular	21.53	27.61
AT5G15350.1	Thale cress	extracellular	22.49	27.33
KRH73474	Soybean	extracellular	22.97	26.82
EER95743	Sorghum	extracellular	26.32	26.57
Bra006297.1-P	Field mustard	extracellular	21.53	26.47
CDX78627	Canola	extracellular	21.53	26.47
Bra000527.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	21.05	26.35
AT2G27035.1	Thale cress	extracellular	20.1	25.77
KRH73475	Soybean	extracellular	23.92	25.38
CDX70608	Canola	extracellular	20.57	25.29
PGSC0003DMT400003642	Potato	extracellular, golgi	21.05	25.0
KRG93595	Soybean	extracellular	19.14	22.73
KRH18434	Soybean	extracellular, plasma membrane	18.66	22.29

Protein Annotations

Gene3D:2.60.40.420	MapMan:35.2	UniProt:A0A1B6Q6A5	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0022900	InterPro:IPR003245	InterPro:IPR008972	EnsemblPlants:KXG33437
ProteinID:KXG33437	ProteinID:KXG33437.1	PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021
PANTHER:PTHR33021:SF43	InterPro:Phytocyanin_dom	EnsemblPlantsGene:SORBI_3003G306000	SUPFAM:SSF49503	TMHMM:TMhelix	UniParc:UPI00081AD621
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:63551374..63552709

Molecular Weight (calculated)

23091.7 Da

IEP (calculated)

9.966

GRAVY (calculated)

0.019

Length

209 amino acids

Sequence
(BLAST)

001: MKRTHTHTPI LFHKYSAQKF KNSTPPLPLP VFHFDIQEMA TATATGLLLV VLLLFAATPA PSLAELFVVG GKKHRWAPNN INYTGWADQQ QFHVGDWLEF
101: RYEKGKYDVV QVNETAYAAC DASSPILSHS RGHNFVFRLN HTGRLYFICS RGYCWNGMKF SVLVQQPAVA PAPHASSASA AAAPGVWSAA LAASLGWGWA
201: VVRPLPFRV

Best Arabidopsis Sequence Match ( AT2G27035.1 )
(BLAST)

001: MMGKYLWALV YVTVMILIIV VEVESSLHRV GGGRYTWNSD VNFSDWANHQ RFYSGDWLYF GFNRTRHNIL QVNKSSYEQC VDNDYIFNIT RGGRDVFQLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL

Arabidopsis Description

ENODL20Early nodulin-like protein 20 [Source:UniProtKB/TrEMBL;Acc:F4IVN9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.