Factsheet for VIT_14s0108g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18432	Soybean	extracellular	60.38	56.8
PGSC0003DMT400003642	Potato	extracellular, golgi	61.64	55.68
CDY26419	Canola	extracellular	51.57	50.62
CDX78627	Canola	extracellular	54.09	50.59
Bra006297.1-P	Field mustard	extracellular	54.09	50.59
CDY55798	Canola	extracellular	54.72	49.43
CDX70608	Canola	extracellular	52.83	49.41
Bra021481.1-P	Field mustard	extracellular	54.09	48.86
CDY34699	Canola	extracellular	53.46	48.3
CDY37547	Canola	extracellular	53.46	48.02
CDY43265	Canola	plasma membrane	53.46	48.02
Bra039148.1-P	Field mustard	extracellular	53.46	48.02
AT3G01070.1	Thale cress	extracellular	50.31	47.9
CDY14895	Canola	extracellular	40.88	46.76
CDX96917	Canola	extracellular	40.88	46.76
Bra035997.1-P	Field mustard	extracellular	40.88	46.76
AT5G15350.1	Thale cress	extracellular	50.31	46.51
AT4G12880.1	Thale cress	extracellular	39.62	44.68
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	39.62	35.8
GSMUA_Achr4P23310_001	Banana	extracellular	37.11	34.71
TraesCS3B01G334700.1	Wheat	extracellular	23.27	33.64
VIT_09s0018g00520.t01	Wine grape	extracellular	35.22	33.33
GSMUA_Achr9P09440_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	32.7	30.95
GSMUA_Achr4P23300_001	Banana	extracellular	33.33	30.46
TraesCS5A01G395600.1	Wheat	extracellular, plasma membrane	30.82	29.7
TraesCS3D01G300100.1	Wheat	extracellular	32.08	29.65
TraesCS5B01G400400.1	Wheat	extracellular, plasma membrane	30.19	29.09
HORVU5Hr1G096540.1	Barley	plasma membrane	30.19	28.74
EER90853	Sorghum	extracellular	30.19	28.57
Os03t0758500-01	Rice	plasma membrane	29.56	28.48
Zm00001d043357_P001	Maize	extracellular	33.96	27.98
TraesCS3A01G301900.1	Wheat	extracellular	30.19	27.75
HORVU3Hr1G074100.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	30.82	27.53
TraesCS2A01G262400.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	30.82	25.26
TraesCS2D01G261600.1	Wheat	cytosol, extracellular, mitochondrion, peroxisome	29.56	24.87
Zm00001d018641_P001	Maize	extracellular	30.19	24.62
TraesCS2B01G279700.1	Wheat	unclear	30.19	24.49
GSMUA_Achr2P13520_001	Banana	vacuole	33.96	24.43
Os07t0112700-01	Rice	extracellular	27.04	24.16
HORVU2Hr1G063510.2	Barley	extracellular, mitochondrion	28.3	22.84
KXG33437	Sorghum	plastid	28.93	22.01
EER95743	Sorghum	extracellular	27.67	21.26
TraesCS5D01G404900.1	Wheat	plastid	30.19	19.83

Protein Annotations

EntrezGene:100243953	wikigene:100243953	Gene3D:2.60.40.420	MapMan:35.1	ProteinID:CBI22267	ProteinID:CBI22267.3
InterPro:Cupredoxin	UniProt:D7SXH0	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0022900	GO:GO:0046658	InterPro:IPR003245	InterPro:IPR008972
EntrezGene:LOC100243953	wikigene:LOC100243953	PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021
PANTHER:PTHR33021:SF63	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	TIGR:TC58747	UniParc:UPI0001BE2259	ArrayExpress:VIT_14s0108g01320
EnsemblPlantsGene:VIT_14s0108g01320	EnsemblPlants:VIT_14s0108g01320.t01	RefSeq:XP_002284104	RefSeq:XP_002284104.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:29934812..29936764

Molecular Weight (calculated)

17995.1 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.272

Length

159 amino acids

Sequence
(BLAST)

001: MCAVVLMLPD VSATRWTVGG NQGWSTNVNY TVWAKDKHFY NGDWLFFVYD RNQMNVLEVN ETNYESCNSD HPLHNWTTGA GRDVVPLNVT RKYYFLSGKG
101: FCYSGMKIAI NVENPPPPPS ASPIKESNDS PSSNYRGQIV VPAVFAIAAV WDSFLRLYW

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.