Factsheet for GSMUA_Achr2P13520_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P23300_001	Banana	extracellular	53.39	67.82
GSMUA_Achr9P09440_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	38.46	50.6
EER90853	Sorghum	extracellular	35.75	47.02
TraesCS5B01G400400.1	Wheat	extracellular, plasma membrane	34.84	46.67
TraesCS5A01G395600.1	Wheat	extracellular, plasma membrane	34.84	46.67
HORVU5Hr1G096540.1	Barley	plasma membrane	34.84	46.11
Os03t0758500-01	Rice	plasma membrane	33.94	45.45
GSMUA_Achr4P23310_001	Banana	extracellular	34.84	45.29
Os07t0112700-01	Rice	extracellular	33.94	42.13
TraesCS2D01G261600.1	Wheat	cytosol, extracellular, mitochondrion, peroxisome	32.58	38.1
Zm00001d018641_P001	Maize	extracellular	33.03	37.44
TraesCS2A01G262400.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	32.58	37.11
TraesCS2B01G279700.1	Wheat	unclear	32.58	36.73
HORVU2Hr1G063510.2	Barley	extracellular, mitochondrion	32.13	36.04
EER95743	Sorghum	extracellular	33.48	35.75
AT4G12880.1	Thale cress	extracellular	22.17	34.75
VIT_14s0108g01320.t01	Wine grape	extracellular	24.43	33.96
CDX96917	Canola	extracellular	20.81	33.09
CDY14895	Canola	extracellular	20.81	33.09
Bra035997.1-P	Field mustard	extracellular	20.81	33.09
CDY37547	Canola	extracellular	26.24	32.77
Bra039148.1-P	Field mustard	extracellular	25.79	32.2
KRH18432	Soybean	extracellular	24.43	31.95
TraesCS5D01G404900.1	Wheat	plastid	34.84	31.82
AT3G01070.1	Thale cress	extracellular	23.98	31.74
CDY43265	Canola	plasma membrane	25.34	31.64
PGSC0003DMT400003639	Potato	extracellular	22.62	31.45
Solyc02g088380.2.1	Tomato	extracellular	23.53	31.14
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	24.43	30.68
CDY55798	Canola	extracellular	23.98	30.11
Bra021481.1-P	Field mustard	extracellular	23.98	30.11
CDY34699	Canola	extracellular	23.98	30.11
AT2G27035.1	Thale cress	extracellular	21.72	29.45
AT5G15350.1	Thale cress	extracellular	22.62	29.07
CDY26419	Canola	extracellular	21.27	29.01
CDX78627	Canola	extracellular	22.17	28.82
Bra006297.1-P	Field mustard	extracellular	22.17	28.82
CDX70608	Canola	extracellular	21.27	27.65
CDY38541	Canola	extracellular	20.81	27.54
CDX83251	Canola	extracellular	20.81	27.54
PGSC0003DMT400003642	Potato	extracellular, golgi	21.72	27.27
Bra000527.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	19.91	26.35
KRG89877	Soybean	extracellular	18.55	25.15
GSMUA_Achr7P05270_001	Banana	extracellular	19.46	25.0
KRG93595	Soybean	extracellular	19.0	23.86
KRH73474	Soybean	extracellular	18.55	22.91
KRH18434	Soybean	extracellular, plasma membrane	18.1	22.86
KRH73475	Soybean	extracellular	19.91	22.34

Protein Annotations

Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0022900	EnsemblPlantsGene:GSMUA_Achr2G13520_001	EnsemblPlants:GSMUA_Achr2P13520_001	EnsemblPlants:GSMUA_Achr2T13520_001	InterPro:IPR003245
InterPro:IPR008972	UniProt:M0S7P3	PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021
PANTHER:PTHR33021:SF56	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295D1F5
SEG:seg	:	:	:	:	:

Description

Putative Lamin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G13520_001]

Coordinates

chr2:+:15651802..15653309

Molecular Weight (calculated)

24984.7 Da

IEP (calculated)

8.892

GRAVY (calculated)

-0.205

Length

221 amino acids

Sequence
(BLAST)

001: MARSQQLYLF LFVVFVSLQL ASADRFTVGD RQGWNPNVNY TVWVEKHKPF HVGDWLVFYY QSGMADVVQV DEAGYNKCDA SNPISNYSKG RNYAFQLNHT
101: GRYYFVCSRG YCYGGMRLAI LAERLPPPSP PPSSHRNSAA RCRLSSALLA LAVSLLSAAA LFHFHLESNP GFSVYRWCDP ILHGQQYDEP SFVPGPGNTP
201: SRILRRTIFN MTTPMSILQN E

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.