Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12880.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G400400.1 | Wheat | extracellular, plasma membrane | 67.77 | 99.39 |
| TraesCS5A01G395600.1 | Wheat | extracellular, plasma membrane | 67.36 | 98.79 |
| HORVU5Hr1G096540.1 | Barley | plasma membrane | 66.12 | 95.81 |
| EER90853 | Sorghum | extracellular | 45.87 | 66.07 |
| Os03t0758500-01 | Rice | plasma membrane | 45.04 | 66.06 |
| GSMUA_Achr4P23300_001 | Banana | extracellular | 33.47 | 46.55 |
| GSMUA_Achr9P09440_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 31.82 | 45.83 |
| Bra035997.1-P | Field mustard | extracellular | 21.9 | 38.13 |
| CDX96917 | Canola | extracellular | 21.9 | 38.13 |
| CDY14895 | Canola | extracellular | 21.9 | 38.13 |
| TraesCS2D01G261600.1 | Wheat | cytosol, extracellular, mitochondrion, peroxisome | 28.1 | 35.98 |
| AT4G12880.1 | Thale cress | extracellular | 20.66 | 35.46 |
| CDY34699 | Canola | extracellular | 25.62 | 35.23 |
| TraesCS3D01G300100.1 | Wheat | extracellular | 24.79 | 34.88 |
| GSMUA_Achr2P13520_001 | Banana | vacuole | 31.82 | 34.84 |
| Bra021481.1-P | Field mustard | extracellular | 25.21 | 34.66 |
| CDY55798 | Canola | extracellular | 25.21 | 34.66 |
| AT3G01070.1 | Thale cress | extracellular | 23.55 | 34.13 |
| CDY43265 | Canola | plasma membrane | 24.38 | 33.33 |
| CDY26419 | Canola | extracellular | 21.9 | 32.72 |
| AT2G27035.1 | Thale cress | extracellular | 21.9 | 32.52 |
| CDY37547 | Canola | extracellular | 23.55 | 32.2 |
| AT5G15350.1 | Thale cress | extracellular | 22.73 | 31.98 |
| KRH18432 | Soybean | extracellular | 22.31 | 31.95 |
| CDX78627 | Canola | extracellular | 22.31 | 31.76 |
| CDX70608 | Canola | extracellular | 22.31 | 31.76 |
| Bra006297.1-P | Field mustard | extracellular | 22.31 | 31.76 |
| Bra039148.1-P | Field mustard | extracellular | 23.14 | 31.64 |
| VIT_14s0108g01320.t01 | Wine grape | extracellular | 19.83 | 30.19 |
| VIT_14s0108g01310.t01 | Wine grape | extracellular, plasma membrane | 21.9 | 30.11 |
| PGSC0003DMT400003642 | Potato | extracellular, golgi | 21.9 | 30.11 |
| PGSC0003DMT400003639 | Potato | extracellular | 19.01 | 28.93 |
| Solyc02g088380.2.1 | Tomato | extracellular | 19.83 | 28.74 |
| TraesCS5D01G369100.1 | Wheat | plasma membrane | 20.66 | 28.57 |
| CDY38541 | Canola | extracellular | 19.01 | 27.54 |
| CDX83251 | Canola | extracellular | 19.01 | 27.54 |
| KRG89877 | Soybean | extracellular | 17.77 | 26.38 |
| KRG93595 | Soybean | extracellular | 19.01 | 26.14 |
| Bra000527.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 17.77 | 25.75 |
| KRH73474 | Soybean | extracellular | 16.53 | 22.35 |
| KRH73475 | Soybean | extracellular | 17.77 | 21.83 |
| KRH18434 | Soybean | extracellular, plasma membrane | 15.29 | 21.14 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G404900.1 | EnsemblPlantsGene:TraesCS5D01G404900 | Gene3D:2.60.40.420 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0009055 |
| InterPro:Cupredoxin | InterPro:IPR003245 | InterPro:IPR008972 | InterPro:Phytocyanin_dom | PANTHER:PTHR33021 | PANTHER:PTHR33021:SF56 |
| PFAM:PD003122 | PFAM:PF02298 | PFscan:PS51485 | SEG:seg | SUPFAM:SSF49503 | TIGR:cd11017 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:469737120..469738043
Molecular Weight (calculated)
26382.5 Da
IEP (calculated)
10.094
GRAVY (calculated)
-0.268
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPGHTASR VPDSFLPGPR SHVPPLLFLR PRSGRPPSHP TTTFLLCPRP ARSILKKQET AARTSRCSTS SEEEARVMER RRAAWAAVLV AVAACAALPA
101: KTTANKIKVN WLPNTNYSGW EQEHGPFYKG DWLVFYYTAG QADVVEVNES GYNRCDASNA IYNYSKGRSF AFELNETKTY YFICSFGYCP GGMRLAIKSQ
201: KLPPPSPPPS AQHHRSAALA GPRAGVALYA AVAVLAALLR AV
101: KTTANKIKVN WLPNTNYSGW EQEHGPFYKG DWLVFYYTAG QADVVEVNES GYNRCDASNA IYNYSKGRSF AFELNETKTY YFICSFGYCP GGMRLAIKSQ
201: KLPPPSPPPS AQHHRSAALA GPRAGVALYA AVAVLAALLR AV
001: MMGKYLWALV YVTVMILIIV VEVESSLHRV GGGRYTWNSD VNFSDWANHQ RFYSGDWLYF GFNRTRHNIL QVNKSSYEQC VDNDYIFNIT RGGRDVFQLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL
Arabidopsis Description
ENODL20Early nodulin-like protein 20 [Source:UniProtKB/TrEMBL;Acc:F4IVN9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.