Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12880.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G12880.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G262400.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion, peroxisome | 96.83 | 94.33 |
| TraesCS2B01G279700.1 | Wheat | unclear | 94.18 | 90.82 |
| HORVU2Hr1G063510.2 | Barley | extracellular, mitochondrion | 77.78 | 74.62 |
| Os07t0112700-01 | Rice | extracellular | 62.43 | 66.29 |
| Zm00001d018641_P001 | Maize | extracellular | 60.32 | 58.46 |
| EER95743 | Sorghum | extracellular | 56.08 | 51.21 |
| GSMUA_Achr9P09440_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 41.8 | 47.02 |
| GSMUA_Achr4P23300_001 | Banana | extracellular | 37.57 | 40.8 |
| TraesCS3D01G300100.1 | Wheat | extracellular | 31.75 | 34.88 |
| CDY14895 | Canola | extracellular | 25.4 | 34.53 |
| CDX96917 | Canola | extracellular | 25.4 | 34.53 |
| Bra035997.1-P | Field mustard | extracellular | 24.87 | 33.81 |
| GSMUA_Achr2P13520_001 | Banana | vacuole | 38.1 | 32.58 |
| TraesCS5D01G369100.1 | Wheat | plasma membrane | 29.63 | 32.0 |
| AT4G12880.1 | Thale cress | extracellular | 23.81 | 31.91 |
| AT2G27035.1 | Thale cress | extracellular | 27.51 | 31.9 |
| VIT_14s0108g01320.t01 | Wine grape | extracellular | 24.87 | 29.56 |
| AT3G01070.1 | Thale cress | extracellular | 25.93 | 29.34 |
| VIT_14s0108g01310.t01 | Wine grape | extracellular, plasma membrane | 26.98 | 28.98 |
| KRH18432 | Soybean | extracellular | 25.4 | 28.4 |
| CDY26419 | Canola | extracellular | 24.34 | 28.4 |
| TraesCS5D01G404900.1 | Wheat | plastid | 35.98 | 28.1 |
| AT5G15350.1 | Thale cress | extracellular | 25.4 | 27.91 |
| PGSC0003DMT400003639 | Potato | extracellular | 23.28 | 27.67 |
| Bra039148.1-P | Field mustard | extracellular | 25.4 | 27.12 |
| CDX83251 | Canola | extracellular | 23.81 | 26.95 |
| CDY55798 | Canola | extracellular | 24.87 | 26.7 |
| CDY34699 | Canola | extracellular | 24.87 | 26.7 |
| Bra021481.1-P | Field mustard | extracellular | 24.87 | 26.7 |
| CDY37547 | Canola | extracellular | 24.87 | 26.55 |
| CDY43265 | Canola | plasma membrane | 24.87 | 26.55 |
| CDX78627 | Canola | extracellular | 23.81 | 26.47 |
| Bra006297.1-P | Field mustard | extracellular | 23.81 | 26.47 |
| Bra000527.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 23.28 | 26.35 |
| CDY38541 | Canola | extracellular | 23.28 | 26.35 |
| KRH73474 | Soybean | extracellular | 24.87 | 26.26 |
| PGSC0003DMT400003642 | Potato | extracellular, golgi | 24.34 | 26.14 |
| CDX70608 | Canola | extracellular | 23.28 | 25.88 |
| Solyc02g088380.2.1 | Tomato | extracellular | 22.75 | 25.75 |
| KRG89877 | Soybean | extracellular | 21.69 | 25.15 |
| KRG93595 | Soybean | extracellular | 22.22 | 23.86 |
| KRH18434 | Soybean | extracellular, plasma membrane | 21.16 | 22.86 |
| KRH73475 | Soybean | extracellular | 23.28 | 22.34 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G261600.1 | EnsemblPlantsGene:TraesCS2D01G261600 | Gene3D:2.60.40.420 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0009055 |
| InterPro:Cupredoxin | InterPro:IPR003245 | InterPro:IPR008972 | InterPro:Phytocyanin_dom | PANTHER:PTHR33021 | PANTHER:PTHR33021:SF47 |
| PFAM:PD003122 | PFAM:PF02298 | PFscan:PS51485 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF49503 |
| TIGR:cd11017 | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:318248349..318249025
Molecular Weight (calculated)
20078.7 Da
IEP (calculated)
9.278
GRAVY (calculated)
-0.196
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANPDREVC HRAGRGGKML LPVMAVLAAA VLASLPSAAV ATNYTVGDEK GWNPKVDYTS WVKKHRPFYK GDWLLFEYQN GRSDVVQVDE VGYDNCDKES
101: AISSHSKGTS YAFQLKEAKD YFFICSYGYC YSGMKLAVTA KKGPASSSPD SGSSSSSSPA AKSSSKSAAA PIAARNAAAL AAAMLLRLL
101: AISSHSKGTS YAFQLKEAKD YFFICSYGYC YSGMKLAVTA KKGPASSSPD SGSSSSSSPA AKSSSKSAAA PIAARNAAAL AAAMLLRLL
001: MMGKYLWALV YVTVMILIIV VEVESSLHRV GGGRYTWNSD VNFSDWANHQ RFYSGDWLYF GFNRTRHNIL QVNKSSYEQC VDNDYIFNIT RGGRDVFQLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL
101: EPKPYYFICG RGYCLKGMKL AITVLPQPPP SAPTNFTSTT TPLIPPNAIT AAILIFAFKA LLL
Arabidopsis Description
ENODL20Early nodulin-like protein 20 [Source:UniProtKB/TrEMBL;Acc:F4IVN9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.