Factsheet for GSMUA_Achr4P23310_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12880.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G334700.1	Wheat	extracellular	35.29	54.55
TraesCS3D01G300100.1	Wheat	extracellular	48.24	47.67
HORVU3Hr1G074100.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	46.47	44.38
GSMUA_Achr9P09440_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	42.35	42.86
TraesCS3A01G301900.1	Wheat	extracellular	43.53	42.77
Zm00001d043357_P001	Maize	extracellular	47.06	41.45
GSMUA_Achr4P23300_001	Banana	extracellular	40.59	39.66
KXG33437	Sorghum	plastid	47.65	38.76
VIT_14s0108g01320.t01	Wine grape	extracellular	34.71	37.11
AT4G12880.1	Thale cress	extracellular	30.0	36.17
KRH18432	Soybean	extracellular	35.29	35.5
GSMUA_Achr2P13520_001	Banana	vacuole	45.29	34.84
CDY14895	Canola	extracellular	28.24	34.53
CDX96917	Canola	extracellular	28.24	34.53
Bra035997.1-P	Field mustard	extracellular	28.24	34.53
AT3G01070.1	Thale cress	extracellular	32.94	33.53
PGSC0003DMT400003639	Potato	extracellular	31.18	33.33
CDY55798	Canola	extracellular	34.12	32.95
CDY34699	Canola	extracellular	34.12	32.95
Bra021481.1-P	Field mustard	extracellular	34.12	32.95
CDY37547	Canola	extracellular	34.12	32.77
CDY43265	Canola	plasma membrane	34.12	32.77
Bra039148.1-P	Field mustard	extracellular	34.12	32.77
CDY26419	Canola	extracellular	31.18	32.72
VIT_14s0108g01310.t01	Wine grape	extracellular, plasma membrane	33.53	32.39
CDX78627	Canola	extracellular	32.35	32.35
Bra006297.1-P	Field mustard	extracellular	32.35	32.35
CDX70608	Canola	extracellular	31.76	31.76
Solyc02g088380.2.1	Tomato	extracellular	31.18	31.74
GSMUA_Achr7P05270_001	Banana	extracellular	31.76	31.4
AT5G15350.1	Thale cress	extracellular	31.18	30.81
PGSC0003DMT400003642	Potato	extracellular, golgi	31.76	30.68
KRG89877	Soybean	extracellular	29.41	30.67
AT2G27035.1	Thale cress	extracellular	28.24	29.45
CDY38541	Canola	extracellular	28.24	28.74
CDX83251	Canola	extracellular	28.24	28.74
KRG93595	Soybean	extracellular	29.41	28.41
KRH73475	Soybean	extracellular	31.76	27.41
Bra000527.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	26.47	26.95
KRH18434	Soybean	extracellular, plasma membrane	26.47	25.71
KRH73474	Soybean	extracellular	27.06	25.7

Protein Annotations

Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0022900	EnsemblPlantsGene:GSMUA_Achr4G23310_001	EnsemblPlants:GSMUA_Achr4P23310_001	EnsemblPlants:GSMUA_Achr4T23310_001	InterPro:IPR003245
InterPro:IPR008972	UniProt:M0SRE2	PFAM:PD003122	PFAM:PF02298	PFscan:PS51485	PANTHER:PTHR33021
PANTHER:PTHR33021:SF43	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294800D
SEG:seg	:	:	:	:	:

Description

Putative Lamin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G23310_001]

Coordinates

chr4:+:23442245..23442848

Molecular Weight (calculated)

18840.5 Da

IEP (calculated)

5.731

GRAVY (calculated)

0.128

Length

170 amino acids

Sequence
(BLAST)

001: MEKSKPTLLL LILVVIFEAA PVAVSAEKFV VGDKQRWAPN VNYTAWSDSH SFHVGDWLVF YYEKGMYDVM EVNATAYEAC AADDPIVNWS RGDSFAYQLN
101: RTGRYYFICS RGYCYGGMKV SILAETIPPL APSPRPQDDS AAVPSAPRRF SAWIAAVSGA VALALVLWFP

Best Arabidopsis Sequence Match ( AT5G15350.1 )
(BLAST)

001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW

Arabidopsis Description

ENODL17Lamin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q39131]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.