Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024387 Potato cytosol, plastid 99.13 99.13
Bra005043.1-P Field mustard cytosol 9.88 79.11
VIT_04s0044g02020.t01 Wine grape plastid 78.89 78.71
KRH39362 Soybean cytosol 74.86 74.63
KRH76479 Soybean plastid 74.55 74.31
KRH28979 Soybean cytosol, plastid 74.55 74.31
KRH07792 Soybean cytosol 74.39 74.04
AT5G65930.3 Thale cress cytosol 72.02 71.96
Os04t0666900-01 Rice cytosol 68.22 71.8
GSMUA_Achr3P11630_001 Banana cytosol 72.89 71.53
GSMUA_Achr1P06170_001 Banana cytosol, plastid 71.54 71.48
EES13049 Sorghum cytosol 71.3 70.97
TraesCS2B01G514800.1 Wheat cytosol 68.54 70.95
CDY18577 Canola cytosol 70.75 70.75
Bra037195.1-P Field mustard cytosol 70.59 70.65
CDX81427 Canola cytosol 70.43 70.43
Zm00001d001928_P006 Maize cytosol, plastid 70.75 70.36
CDY55105 Canola cytosol 69.64 70.03
TraesCS2A01G487500.1 Wheat cytosol 70.04 69.87
TraesCS2D01G487700.1 Wheat cytosol 70.12 69.35
Zm00001d026548_P049 Maize cytosol 70.2 69.16
Bra031801.1-P Field mustard cytosol 69.57 68.7
HORVU2Hr1G108840.1 Barley plastid 69.25 68.49
CDY57771 Canola cytosol, plastid 69.09 63.52
Solyc12g005250.1.1 Tomato cytosol 14.7 26.69
Solyc07g064030.2.1 Tomato cytosol, plastid 15.89 25.12
Solyc12g011290.1.1 Tomato nucleus 18.81 20.48
Solyc11g010920.1.1 Tomato cytosol 18.1 20.07
Solyc06g069130.2.1 Tomato cytosol, nucleus 15.57 19.84
Solyc06g009780.2.1 Tomato nucleus 15.34 19.3
Solyc01g100120.2.1 Tomato cytosol 15.34 19.11
Solyc09g075480.2.1 Tomato nucleus 15.02 19.0
Solyc07g065880.2.1 Tomato plastid 16.21 16.19
Solyc04g016080.1.1 Tomato nucleus 14.47 14.87
Solyc12g036810.1.1 Tomato extracellular 10.59 13.91
Protein Annotations
Gene3D:1.20.80.10Gene3D:1.25.40.530Gene3D:2.30.29.30MapMan:20.1.3.12Gene3D:3.10.20.90Gene3D:3.40.850.10
InterPro:Band_41_domainncoils:CoilInterPro:FERM/acyl-CoA-bd_prot_sfInterPro:FERM_2InterPro:FERM_NInterPro:FERM_central
InterPro:FERM_domainGO:GO:0000166GO:GO:0003674GO:GO:0003774GO:GO:0003777GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005856GO:GO:0005871GO:GO:0005886GO:GO:0007018GO:GO:0008017GO:GO:0008150
GO:GO:0008152GO:GO:0009653GO:GO:0009987GO:GO:0010091GO:GO:0016020GO:GO:0016043
GO:GO:0016491GO:GO:0016787GO:GO:0016887GO:GO:0030154GO:GO:0055114InterPro:IPR000299
InterPro:IPR000857InterPro:IPR001752InterPro:IPR011993InterPro:IPR014352InterPro:IPR036961InterPro:IPR038185
UniProt:K4B7G6InterPro:Kinesin-like_famInterPro:Kinesin_motor_CSInterPro:Kinesin_motor_domInterPro:Kinesin_motor_dom_sfInterPro:MyTH4_dom
InterPro:MyTH4_dom_sfInterPro:P-loop_NTPasePFAM:PF00225PFAM:PF00373PFAM:PF00784PFAM:PF09379
InterPro:PH-like_dom_sfPRINTS:PR00380ScanProsite:PS00411PFscan:PS50057PFscan:PS50067PFscan:PS51016
PANTHER:PTHR24115PANTHER:PTHR24115:SF162InterPro:Prismane-like_sfSMART:SM00129SMART:SM00139SMART:SM00295
SUPFAM:SSF47031SUPFAM:SSF50729SUPFAM:SSF52540SUPFAM:SSF56821EnsemblPlantsGene:Solyc02g068340.2EnsemblPlants:Solyc02g068340.2.1
UniParc:UPI0002767929SEG:seg::::
Description
Kinesin-like calmodulin-binding protein [Source:Projected from Arabidopsis thaliana (AT5G65930) UniProtKB/Swiss-Prot;Acc:Q9FHN8]
Coordinates
chr2:-:38299577..38309198
Molecular Weight (calculated)
143438.0 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.530
Length
1265 amino acids
Sequence
(BLAST)
0001: MTSDMPPVSM RSSRSSFGSS NGYETPSHYS FPTSNGDDYD SDGSNFAPPT PNTLSSVLSP ELAGAIPYID RFQVEGFLKA MQKQIHSASK RGFFLKKSVG
0101: PQVREKFTFE DMLCFQREPI PTSILKINGD LISRAVKLFQ SILKYMGIDS YDRVAPISFD ERIELVGKLF KQALKRSELR DEMFAQISKQ TRNNPERHSL
0201: IKAWELMYLC ASCMPPSKEI GGYLSEYIHT VAHGTNTDSE VQVFAINTLN ALKRSIKAGP RHTIPGREEI EAHLTGKKLT TIVFFLDETF EEITYDMATT
0301: VADAIEEVAG IIKLSAHASF SLFECRKVVT GSKSPDLGNE EYIGLDENKY IGDLLADFKA SKDRSKGEIL HCKLIFKKKL FRESDEAVTE PMFVQLSYVQ
0401: LQHDYIMGNY PVGKEDAAQM SALQILVDIG YVDGPESCTD WTSLLERFLP RQIAMTRAKR EWELDILSRY KVMENLTKDD AKQQFLRILR TLPYGNSVFF
0501: AVRKIDDPIG LLPGKIVLGI NKRGVHFFRP VPKEYLHSAE LRDIMQFGSS NTAVFFKMRV AGVLHIFQFE TKQGEEICVA LQTHINDVML RRYSKARSSA
0601: NGSVNGDVPN NLKTTNTDIN ERRIQDLSRA LEESQKKVND LVEDLHERQK QESEMQEELD SLKDNLSSEK QNLAAAAYDC DKFRSLCDEK DAELQAALTE
0701: KRNLEMRLSK LSSQGLEKNI TKELVEANNQ VLQKIQEELK ARTMDLRTAE ETKRRLLSEK ASLEEKVIGL EKKKSNEMES LQKDFEKECK GLKLQVSELQ
0801: RKLEEAKHDL IGAQSGLEAK DKELEMLQNN LKELEELREM KEDIDRKNAQ TAAILKMQGA QLAEMEALYR EEQVLRKKYF NIIEDMKGKI RVYCRLRPLC
0901: EKEIIAKERN AIRSVDEFTV EHLWKDDKAK QHMYDRVFDG NATQDDVFED TKYLVQSAVD GYNVCIFAYG QTGSGKTFTI YGADSNPGLT PRAMSELFRI
1001: MKKDSNKFSF SLKAYMVELY QDTLVDLLLP KQAKRLKLDI KKDAKGMVSV ENVTVVSIST YEELKTIIQR GSEQRHTTGT LMNEQSSRSH LIVSVIIEST
1101: NLQTQAIARG KLSFVDLAGS ERVKKSGSAG NQLKEAQSIN KSLSALGDVI SALSSGNQHI PYRNHKLTML MSDSLGGNAK TLMFVNISPA ESNLDETHNS
1201: LTYASRVRSI VNDPSKNVSS KEVARLKKLV SYWKEQAGRK GDDEELEEIQ DERPSKDKND GRYSM
Best Arabidopsis Sequence Match ( AT5G65930.2 )
(BLAST)
0001: MEGQRGSNSS LSSGNGTEVA TDVSSCFYVP NPSGTDFDAE SSSLPPLSPA PQVALSIPAE LAAAIPLIDR FQVEAFLRLM QKQIQSAGKR GFFYSKKSSG
0101: SNVRERFTFE DMLCFQKDPI PTSLLKINSD LVSRATKLFH LILKYMGVDS SDRSTPPSLD ERIDLVGKLF KKTLKRVELR DELFAQISKQ TRHNPDRQYL
0201: IKAWELMYLC ASSMPPSKDI GGYLSEYIHN VAHDATIEPD AQVLAVNTLK ALKRSIKAGP RHTTPGREEI EALLTGRKLT TIVFFLDETF EEISYDMATT
0301: VSDAVEELAG TIKLSAFSSF SLFECRKVVS SSKSSDPGNE EYIGLDDNKY IGDLLAEFKA IKDRNKGEIL HCKLVFKKKL FRESDEAVTD LMFVQLSYVQ
0401: LQHDYLLGNY PVGRDDAAQL CALQILVGIG FVNSPESCID WTSLLERFLP RQIAITRAKR EWELDILARY RSMENVTKDD ARQQFLRILK ALPYGNSVFF
0501: SVRKIDDPIG LLPGRIILGI NKRGVHFFRP VPKEYLHSAE LRDIMQFGSS NTAVFFKMRV AGVLHIFQFE TKQGEEICVA LQTHINDVML RRYSKARSAA
0601: NSLVNGDISC SSKPQNFEVY EKRLQDLSKA YEESQKKIEK LMDEQQEKNQ QEVTLREELE AIHNGLELER RKLLEVTLDR DKLRSLCDEK GTTIQSLMSE
0701: LRGMEARLAK SGNTKSSKET KSELAEMNNQ ILYKIQKELE VRNKELHVAV DNSKRLLSEN KILEQNLNIE KKKKEEVEIH QKRYEQEKKV LKLRVSELEN
0801: KLEVLAQDLD SAESTIESKN SDMLLLQNNL KELEELREMK EDIDRKNEQT AAILKMQGAQ LAELEILYKE EQVLRKRYYN TIEDMKGKIR VYCRIRPLNE
0901: KESSEREKQM LTTVDEFTVE HPWKDDKRKQ HIYDRVFDMR ASQDDIFEDT KYLVQSAVDG YNVCIFAYGQ TGSGKTFTIY GHESNPGLTP RATKELFNIL
1001: KRDSKRFSFS LKAYMVELYQ DTLVDLLLPK SARRLKLEIK KDSKGMVFVE NVTTIPISTL EELRMILERG SERRHVSGTN MNEESSRSHL ILSVVIESID
1101: LQTQSAARGK LSFVDLAGSE RVKKSGSAGC QLKEAQSINK SLSALGDVIG ALSSGNQHIP YRNHKLTMLM SDSLGGNAKT LMFVNVSPAE SNLDETYNSL
1201: LYASRVRTIV NDPSKHISSK EMVRLKKLVA YWKEQAGKKG EEEDLVDIEE DRTRKDEADS
Arabidopsis Description
ZWIKinesin-like calmodulin-binding protein ZWICHEL [Source:UniProtKB/TrEMBL;Acc:F4JXM5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.