Factsheet for VIT_04s0044g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005043.1-P	Field mustard	cytosol	9.94	79.75
KRH76479	Soybean	plastid	79.65	79.59
KRH28979	Soybean	cytosol, plastid	79.26	79.2
PGSC0003DMT400024387	Potato	cytosol, plastid	78.94	79.13
Solyc02g068340.2.1	Tomato	nucleus	78.71	78.89
KRH39362	Soybean	cytosol	77.68	77.62
KRH07792	Soybean	cytosol	76.89	76.71
Os04t0666900-01	Rice	cytosol	71.45	75.37
TraesCS2B01G514800.1	Wheat	cytosol	72.24	74.96
GSMUA_Achr3P11630_001	Banana	cytosol	75.95	74.71
AT5G65930.3	Thale cress	cytosol	74.37	74.49
EES13049	Sorghum	cytosol	74.61	74.43
TraesCS2A01G487500.1	Wheat	cytosol	74.29	74.29
GSMUA_Achr1P06170_001	Banana	cytosol, plastid	74.05	74.17
TraesCS2D01G487700.1	Wheat	cytosol	74.37	73.73
CDY18577	Canola	cytosol	73.5	73.68
Bra037195.1-P	Field mustard	cytosol	73.42	73.66
CDX81427	Canola	cytosol	73.27	73.44
Zm00001d001928_P006	Maize	cytosol, plastid	73.58	73.35
Zm00001d026548_P049	Maize	cytosol	73.9	72.98
HORVU2Hr1G108840.1	Barley	plastid	73.42	72.79
CDY55105	Canola	cytosol	71.53	72.1
Bra031801.1-P	Field mustard	cytosol	71.53	70.8
CDY57771	Canola	cytosol, plastid	71.53	65.92
VIT_14s0128g00450.t01	Wine grape	cytosol	13.09	28.92
VIT_00s0532g00020.t01	Wine grape	cytosol	16.4	25.94
VIT_19s0014g05070.t01	Wine grape	cytosol	15.06	25.03
VIT_14s0128g00460.t01	Wine grape	cytosol	14.75	24.13
VIT_19s0027g00080.t01	Wine grape	nucleus	18.61	22.74
VIT_00s0218g00050.t01	Wine grape	nucleus	18.69	22.64
VIT_18s0001g07800.t01	Wine grape	cytosol	15.3	22.1
VIT_14s0060g01570.t01	Wine grape	cytosol	16.09	20.06
VIT_17s0000g03700.t01	Wine grape	cytosol	15.85	19.92
VIT_02s0025g03480.t01	Wine grape	cytosol	16.17	19.21
VIT_07s0005g00940.t01	Wine grape	cytosol	15.38	19.02
VIT_08s0007g08800.t01	Wine grape	cytosol	14.04	18.5
VIT_19s0015g01150.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	15.93	18.13

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.530	EntrezGene:100261900	wikigene:100261900	Gene3D:2.30.29.30	MapMan:20.1.3.12
Gene3D:3.10.20.90	Gene3D:3.40.850.10	InterPro:Band_41_domain	ProteinID:CBI37480	ProteinID:CBI37480.3	ncoils:Coil
UniProt:D7U483	InterPro:FERM/acyl-CoA-bd_prot_sf	InterPro:FERM_2	InterPro:FERM_N	InterPro:FERM_central	InterPro:FERM_domain
EMBL:FN596506	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005871	GO:GO:0005886	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150
GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0010091	GO:GO:0016020	GO:GO:0016043
GO:GO:0016491	GO:GO:0016787	GO:GO:0016887	GO:GO:0030154	GO:GO:0055114	InterPro:IPR000299
InterPro:IPR000857	InterPro:IPR001752	InterPro:IPR011993	InterPro:IPR014352	InterPro:IPR036961	InterPro:IPR038185
InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100261900	wikigene:LOC100261900
InterPro:MyTH4_dom	InterPro:MyTH4_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00225	PFAM:PF00373	PFAM:PF00784
PFAM:PF09379	InterPro:PH-like_dom_sf	PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50057	PFscan:PS50067
PFscan:PS51016	PANTHER:PTHR24115	PANTHER:PTHR24115:SF162	InterPro:Prismane-like_sf	SMART:SM00129	SMART:SM00139
SMART:SM00295	SUPFAM:SSF47031	SUPFAM:SSF50729	SUPFAM:SSF52540	SUPFAM:SSF56821	TIGR:TC60772
TIGR:TC68912	UniParc:UPI0001BE46F2	ArrayExpress:VIT_04s0044g02020	EnsemblPlantsGene:VIT_04s0044g02020	EnsemblPlants:VIT_04s0044g02020.t01	unigene:Vvi.5270
RefSeq:XP_002263149	RefSeq:XP_002263149.2	RefSeq:XP_002263149.3	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:23798679..23815333

Molecular Weight (calculated)

143461.0 Da

IEP (calculated)

7.002

GRAVY (calculated)

-0.458

Length

1268 amino acids

Sequence
(BLAST)

0001: MTIDMPPVMA QTVRTSRSSF SSSNGNETPL HNSATISNGD GYDSDGSNFA PLTPGSLSAA IPAELAGAIP LIDRFQVEGF LRSMQKQIQS SGKRGFFSKR
0101: SVGPQVRDKF TFEDMMCFQR DPIPTSLLKI NSDLVSRAIK LFQIILKYME VDSSDRVSQT SLDERIELVG KLYKQTLKRP ELRDELFAQI SKQTRNNPDR
0201: QLLIRAWELM YLCASSMPPS KDIGGYLSEY VHNVAHGMNV DSEVQVLALY TLNALKRSIK AGPRHTIPGR EEIEALLTGK KLTTIVFFLD ETFEEIAYDM
0301: ATTVADAVEE LAGIIKLSAY SSFSLFECRK IITGSKSPDP GSEEYIGLDD NKYIGDLLAE FKAAKDRSKG EILHCKLIFK KKLFRESDES VADPMFVQLS
0401: YVQLQHDYIL GNYPVGRDDA AQLSALQILI EIGFIGCPES CTDWTSLLER FLPRQIAITR AKRDWESDIL SRYHLMEHLT KDDARQQFLR ILRTLPYGNS
0501: VFFSVRKIDD PIGLLPGRII LGINKRGVHF FRPVPKEYLH SAELRDIMQF GSSNTAVFFK MRVAGVLHIF QFETKQGEEI CVALQTHIND VMLRRYSKAR
0601: SAASGSMNGD SSSNVKPPSV EVYEKRVQDL SKALEESQKN AIRLSEDLHE KKKEQEKMQE ELEGLKDSLI SEKQILTEVI CDRDKLRSLC DERDSALQAA
0701: LLEKRSMEVR LGKLSSQGLE NNAKKDLVGT NSQMLLKLQD ELKRRCEELH VAQETAKRLG NEKQLLEQRI QRLEKKKADE VEVLEKKFEQ EGKTLRLRVS
0801: ELERKLEVVT QDLAVAESTL AVRATDLASL QNNLKELEEL REMKEDIDRK NEQTAAILKM QAAQLAELEV LYKDEQVLRK RYFNIIEDMK GKIRVFCRLR
0901: PLSEKEVVEK ERCVLNTFDE FTVEHPWKDD KAKQHIYDHV FGGSATQEDV FEDTRYLVQS AVDGYNVCIF AYGQTGSGKT FTIYGSDGNP GLTPRATAEL
1001: FKIIKRDANK FSFSLKAYMV ELYQDTLVDL LLPKNAKRLK LDIKKDSKGM VSVENVSIAS LSTYEELKSI IQRGSEQRHT SGTQMNEESS RSHLILSIII
1101: ESTNLQTQSV ARGKLSFVDL AGSERVKKSG SSGNQLKEAQ SINKSLSALG DVISALSSGG QHIPYRNHKL TMLMSDSLGG NAKTLMFVNI SPAESNLDET
1201: YNSLTYASRV RSIVNDASKN VSSKEIVRLK KLVAYWKEQA GRRGDDDDFE EIQEERNMRE RTDGRHSM

Best Arabidopsis Sequence Match ( AT5G65930.2 )
(BLAST)

0001: MEGQRGSNSS LSSGNGTEVA TDVSSCFYVP NPSGTDFDAE SSSLPPLSPA PQVALSIPAE LAAAIPLIDR FQVEAFLRLM QKQIQSAGKR GFFYSKKSSG
0101: SNVRERFTFE DMLCFQKDPI PTSLLKINSD LVSRATKLFH LILKYMGVDS SDRSTPPSLD ERIDLVGKLF KKTLKRVELR DELFAQISKQ TRHNPDRQYL
0201: IKAWELMYLC ASSMPPSKDI GGYLSEYIHN VAHDATIEPD AQVLAVNTLK ALKRSIKAGP RHTTPGREEI EALLTGRKLT TIVFFLDETF EEISYDMATT
0301: VSDAVEELAG TIKLSAFSSF SLFECRKVVS SSKSSDPGNE EYIGLDDNKY IGDLLAEFKA IKDRNKGEIL HCKLVFKKKL FRESDEAVTD LMFVQLSYVQ
0401: LQHDYLLGNY PVGRDDAAQL CALQILVGIG FVNSPESCID WTSLLERFLP RQIAITRAKR EWELDILARY RSMENVTKDD ARQQFLRILK ALPYGNSVFF
0501: SVRKIDDPIG LLPGRIILGI NKRGVHFFRP VPKEYLHSAE LRDIMQFGSS NTAVFFKMRV AGVLHIFQFE TKQGEEICVA LQTHINDVML RRYSKARSAA
0601: NSLVNGDISC SSKPQNFEVY EKRLQDLSKA YEESQKKIEK LMDEQQEKNQ QEVTLREELE AIHNGLELER RKLLEVTLDR DKLRSLCDEK GTTIQSLMSE
0701: LRGMEARLAK SGNTKSSKET KSELAEMNNQ ILYKIQKELE VRNKELHVAV DNSKRLLSEN KILEQNLNIE KKKKEEVEIH QKRYEQEKKV LKLRVSELEN
0801: KLEVLAQDLD SAESTIESKN SDMLLLQNNL KELEELREMK EDIDRKNEQT AAILKMQGAQ LAELEILYKE EQVLRKRYYN TIEDMKGKIR VYCRIRPLNE
0901: KESSEREKQM LTTVDEFTVE HPWKDDKRKQ HIYDRVFDMR ASQDDIFEDT KYLVQSAVDG YNVCIFAYGQ TGSGKTFTIY GHESNPGLTP RATKELFNIL
1001: KRDSKRFSFS LKAYMVELYQ DTLVDLLLPK SARRLKLEIK KDSKGMVFVE NVTTIPISTL EELRMILERG SERRHVSGTN MNEESSRSHL ILSVVIESID
1101: LQTQSAARGK LSFVDLAGSE RVKKSGSAGC QLKEAQSINK SLSALGDVIG ALSSGNQHIP YRNHKLTMLM SDSLGGNAKT LMFVNVSPAE SNLDETYNSL
1201: LYASRVRTIV NDPSKHISSK EMVRLKKLVA YWKEQAGKKG EEEDLVDIEE DRTRKDEADS

Arabidopsis Description

ZWIKinesin-like calmodulin-binding protein ZWICHEL [Source:UniProtKB/TrEMBL;Acc:F4JXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.