Factsheet for VIT_17s0000g03700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059487	Potato	cytosol	14.07	78.45
PGSC0003DMT400074040	Potato	cytosol	18.34	62.5
GSMUA_Achr1P02560_001	Banana	cytosol	37.36	61.7
Os02t0229600-00	Rice	plasma membrane	32.41	58.5
VIT_02s0025g03480.t01	Wine grape	cytosol	60.75	57.45
Solyc06g069130.2.1	Tomato	cytosol, nucleus	56.1	57.0
CDY19209	Canola	plastid	48.17	52.09
OQU78322	Sorghum	cytosol	48.36	50.67
GSMUA_AchrUn_...	Banana	cytosol	52.13	50.53
GSMUA_Achr4P25620_001	Banana	cytosol	54.91	50.36
HORVU3Hr1G070900.4	Barley	cytosol	48.36	50.05
TraesCS3B01G309000.1	Wheat	cytosol	48.07	49.9
Os01t0744000-01	Rice	cytosol	47.97	49.85
TraesCS3A01G275300.1	Wheat	cytosol	47.97	49.79
TraesCS3D01G275200.1	Wheat	cytosol	47.97	49.79
KRH39191	Soybean	cytosol	45.39	49.67
Os05t0521300-04	Rice	cytosol	49.55	49.41
Zm00001d012763_P002	Maize	cytosol	42.52	49.2
OQU87522	Sorghum	cytosol	46.18	48.9
CDY11085	Canola	cytosol, plastid	48.66	48.52
Bra003825.1-P	Field mustard	cytosol, plastid	48.46	48.22
CDX68208	Canola	cytosol, plastid	48.36	48.22
CDX73023	Canola	cytosol, plastid	42.62	48.04
AT1G73860.1	Thale cress	cytosol, plastid	48.56	47.8
Zm00001d043504_P030	Maize	cytosol	46.09	47.55
CDX96493	Canola	cytosol, plastid	43.31	46.39
Zm00001d010790_P017	Maize	cytosol, endoplasmic reticulum, nucleus	47.37	46.27
Zm00001d038797_P001	Maize	cytosol	38.45	46.14
Os06t0554700-01	Rice	cytosol	21.31	46.04
KRH41631	Soybean	cytosol	47.77	45.73
CDY26163	Canola	plastid	48.76	45.22
KRH60336	Soybean	cytosol	54.91	44.71
TraesCS1A01G341500.1	Wheat	cytosol	48.46	43.9
TraesCS1D01G343800.1	Wheat	cytosol	47.97	43.45
Bra025908.1-P	Field mustard	cytosol, plastid	46.28	43.36
TraesCS1B01G354200.2	Wheat	cytosol	47.67	43.18
GSMUA_Achr7P08590_001	Banana	cytosol	52.33	43.03
Solyc12g036810.1.1	Tomato	extracellular	40.63	42.58
HORVU7Hr1G088620.8	Barley	cytosol	48.36	42.32
KXG20162	Sorghum	cytosol	50.25	41.94
AT1G18410.4	Thale cress	cytosol	47.67	41.72
TraesCS7D01G366700.2	Wheat	cytosol	50.05	41.5
TraesCS7A01G356000.1	Wheat	cytosol	50.05	41.36
Bra015957.1-P	Field mustard	cytosol, plastid	34.19	41.27
TraesCS7B01G271700.2	Wheat	cytosol	49.75	41.25
TraesCS6A01G188600.1	Wheat	cytosol	46.28	35.11
Zm00001d016273_P001	Maize	cytosol	46.38	35.11
VIT_14s0060g01570.t01	Wine grape	cytosol	35.18	34.91
VIT_07s0005g00940.t01	Wine grape	cytosol	34.99	34.44
HORVU0Hr1G015810.3	Barley	cytosol	46.48	34.11
TraesCS6B01G215900.1	Wheat	cytosol	46.98	34.05
Zm00001d036987_P001	Maize	cytosol, plastid	35.38	34.0
KXG29848	Sorghum	cytosol	48.56	33.96
TraesCS6D01G177300.1	Wheat	cytosol	46.68	33.81
HORVU1Hr1G075920.5	Barley	cytosol	39.25	33.53
VIT_08s0007g08800.t01	Wine grape	cytosol	31.42	32.95
VIT_19s0015g01150.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	34.19	30.97
VIT_14s0128g00450.t01	Wine grape	cytosol	17.44	30.66
VIT_19s0014g05070.t01	Wine grape	cytosol	21.21	28.05
VIT_14s0128g00460.t01	Wine grape	cytosol	21.31	27.74
VIT_00s0532g00020.t01	Wine grape	cytosol	20.42	25.69
VIT_18s0001g07800.t01	Wine grape	cytosol	20.71	23.8
VIT_19s0027g00080.t01	Wine grape	nucleus	23.49	22.83
VIT_00s0218g00050.t01	Wine grape	nucleus	22.1	21.3
VIT_04s0044g02020.t01	Wine grape	plastid	19.92	15.85

Protein Annotations

Gene3D:1.10.418.10	EntrezGene:100254382	wikigene:100254382	MapMan:20.1.3.12	Gene3D:3.40.850.10	ProteinID:CCB43220
ProteinID:CCB43220.1	InterPro:CH-domain	InterPro:CH_dom_sf	ncoils:Coil	UniProt:F6GTL1	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005871	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0016887	InterPro:IPR001715	InterPro:IPR001752	InterPro:IPR036872	InterPro:IPR036961	InterPro:Kinesin-like_fam
InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100254382	wikigene:LOC100254382	InterPro:P-loop_NTPase
PFAM:PF00225	PFAM:PF00307	PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50021	PFscan:PS50067
PANTHER:PTHR24115	PANTHER:PTHR24115:SF741	SMART:SM00033	SMART:SM00129	SUPFAM:SSF47576	SUPFAM:SSF52540
UniParc:UPI0002108649	ArrayExpress:VIT_17s0000g03700	EnsemblPlantsGene:VIT_17s0000g03700	EnsemblPlants:VIT_17s0000g03700.t01	RefSeq:XP_002276223	RefSeq:XP_002276223.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3626431..3634245

Molecular Weight (calculated)

112034.0 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.646

Length

1009 amino acids

Sequence
(BLAST)

0001: MLPNLNLPVK ASVEELRACL IDGAVLCRFL NRLRPGSVSE VRDYDHSSGM RYENVKKFLE ALDALGMPGF EIADLEKGSM KTVLECILTL KAHTIPTVCG
0101: NNFPFSSSFS KSGNIGPQVD DPSRGPTPCG EDRQKSFSES KFQRALRSPV KSEPSAALIY HVGHKFHEVF QLKQGRYADI PAAKLTEMMK SNSLDNAPTQ
0201: SLLSVVNGIL DESVERKNEE IPHRVACLLR KVVQEIERRI STQAEHLRTQ NNLFKSREEK YQSRIRVLET LATGTNDENQ IVLNHLQQIK KKKDQSGIEI
0301: SALKQELEIA NKEKDQNNIE ITALKQELEI ARKTYEEHFS EMEKQGMGDK AEFEKRSREL EQLLADSRNK INKLEAYSGL EGQRWDKKEQ SYLRLVNFLF
0401: SALQGLRSTS ESIKKEVLET QKSYSEDFKC LGVKLKALVD ASENYHAVLA ENRRLYNEVQ DLKGNIRVYC RIRPFLRGQN GKQTTIEYIG EDGELGIVNP
0501: SKQGKDSHRL FKFNKVYGPA ATQAEVFSDT QPLVRSVLDG YNVCIFAYGQ TGSGKTYTMT GPNAASKEEW GVNYRALSDL FEITQSRRSS FMYEIGVQMV
0601: EIYNEQVRDL LSSDMKNSFH PHGLAVPDAT MLPVKSTSDV MELMDIGQKN RSVGATAMNE RSSRSHSIVT IHAWGTDLKT GASLRGSLHL VDLAGSERVD
0701: RSEVTGERLR EAQHINKSLS ALGDVIFALA QKSSHVPYRN SKLTQVLQSS LGGQAKTLMF VQLNPDVNSF SETASTLKFA ERVSGVELGA ARSSKEGRDV
0801: KELMDQVASL KDTIAKKDEE IERLQLLKDL KNVHPGLNCE RSVTGSFKYG SSPPSRNFVG GTAQLSQKLP GGKGLGPAER AASDQDNSSE YSDKHSDADS
0901: QQSMEDFKQP NESLRKSKLA GGDIGQNNPA DASTLGFGET DCDERSSDTS DGGFPMRTEN NGPAQSKASE TTEKSKPASR ITRPPQRTLR TSSPPPSHLK
1001: DSPKAATGM

Best Arabidopsis Sequence Match ( AT1G63640.2 )
(BLAST)

0001: MSSHLSQDAN MNGVYVRSDV SSMLSFDGSE SRESMDDSKK GHQSLVEWLN ETLPYLKLPW EASEDELRAC LRDGTVLCSL LNQLSPGSMR MGGSFEPASV
0101: KIERFLTAMD EMALPRFEVS DIEQGDMVPV LQSLKALKAS FSDGSYDKNS LAARRRWSLP EDHSDSRGDD RNFTDGFQSK EGSEIDMSDA KISDLLKSNS
0201: LRNAPTRSLF DMLDKLLDES MTKMNGHVSH AMASLLSALV QVIEQRISNQ ADNLKNQNIL FRVREEKYRS RIKVLESLAA GTTKENEIVT NCMEHIKLEK
0301: TRIEEKERSE EKDVVRLRKE KERSDAEIRQ LKQELKLVKE THENQCLELE AKAQKTRDEL EKKLKDAELH VVDSSRKVKE LEKLCQSKSQ RWEKKECIYQ
0401: NFIDNHSGAL QELSATSLSI KHEVVRTQRK YFEDLNYYGL KLKGVADAAK NYHVVLEENR RLYNEVQELK GNIRVYCRIR PFLPGQNSRQ TTIEYIGETG
0501: ELVVANPFKQ GKDTHRLFKF NKVFDQAATQ EEVFLDTRPL IRSILDGYNV CIFAYGQTGS GKTYTMSGPS ITSKEDWGVN YRALNDLFLL TQSRQNTVMY
0601: EVGVQMVEIY NEQVRDILSD GIWNTALPNG LAVPDASMHC VRSTEDVLEL MNIGLMNRTV GATALNERSS RSHCVLSVHV RGVDVETDSI LRGSLHLVDL
0701: AGSERVDRSE ATGERLKEAQ HINKSLSALG DVIFALAHKN PHVPYRNSKL TQVLQSSLGG QAKTLMFVQV NPDGDSYAET VSTLKFAERV SGVELGAAKS
0801: SKEGRDVRQL MEQVSNLKDV IAKKDEELQN FQKVKGNNAT SLKRGLSNLR LVGPTSPRRH SIGASPNARR GKASGLFGRG TSDVDNCSEY SSKHSDSGSQ
0901: QSSDERKHQK DYHQPSKFAG AAKGIDFDDE DVELVGLADA DSEDRLSDIS DSCLSMGTET DGSISSAVEL TLFPETAKPL ELIERPEARM TSEKLEKSVK
1001: MGKTEPKDSR TNIPSKIPKQ TLKPPGQTRP SRLSIATSSS SKALTGAKRP TISTSSSAKP LNRRR

Arabidopsis Description

P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain [Source:TAIR;Acc:AT1G63640]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.