Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g017720.2.1 | Tomato | extracellular | 62.5 | 61.4 |
| Solyc11g011210.1.1 | Tomato | extracellular | 50.89 | 59.38 |
| Solyc06g069790.2.1 | Tomato | extracellular | 52.68 | 56.73 |
| Solyc03g116060.2.1 | Tomato | extracellular | 49.11 | 52.88 |
| Solyc06g007920.1.1 | Tomato | cytosol | 38.39 | 51.19 |
| Solyc04g078200.2.1 | Tomato | extracellular | 27.68 | 47.69 |
| Solyc06g007910.2.1 | Tomato | extracellular, nucleus | 35.71 | 42.55 |
| Solyc12g042500.1.1 | Tomato | extracellular | 33.04 | 42.05 |
| Solyc01g107370.2.1 | Tomato | extracellular | 33.04 | 41.57 |
| Solyc08g005620.2.1 | Tomato | extracellular | 33.04 | 41.57 |
| Solyc12g042520.1.1 | Tomato | extracellular | 30.36 | 38.64 |
| Solyc06g007890.2.1 | Tomato | extracellular | 32.14 | 38.3 |
Protein Annotations
| EnsemblPlants:Solyc02g089350.2.1 | EnsemblPlantsGene:Solyc02g089350.2 | GO:GO:0005575 | GO:GO:0005576 | InterPro:GASA | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF8 | PFAM:PF02704 | ProteinID:CAA44807.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000004A1C7 |
| UniProt:P27057 | MapMan:11.10.2.1.1 | : | : | : | : |
Description
GAST1Protein GAST1 [Source:UniProtKB/Swiss-Prot;Acc:P27057]
Coordinates
chr2:+:51198766..51200106
Molecular Weight (calculated)
12784.7 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.556
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKMSIVLF VLLVVFLTQN QVSRANIMRD EQQQQQRNNQ LYGVSEGRLH PQDCQPKCTY RCSKTSYKKP CMFFCQKCCA KCLCVPAGTY GNKQSCPCYN
101: NWKTKRGGPK CP
101: NWKTKRGGPK CP
001: MATKLSIIVF SIVVLHLLLS AHMHPIYLES PARQPQPPQS QPQLPHHNNS QYGTTQGSLQ PQECGPRCGD RCSNTQYKKP CLFFCNKCCN KCLCVPPGTY
101: GNKQVCPCYN NWKTKSGGPK CP
101: GNKQVCPCYN NWKTKSGGPK CP
Arabidopsis Description
Gibberellin-regulated family protein [Source:TAIR;Acc:AT3G10185]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.