Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc04g008430.1.1 | |
Solyc04g082160.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G15230.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
AT5G15230.1 | Solyc04g082160.2.1 | AT5G42220.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400083077 | Potato | extracellular | 97.12 | 98.06 |
Solyc03g116060.2.1 | Tomato | extracellular | 77.88 | 77.88 |
VIT_17s0000g06210.t01 | Wine grape | extracellular | 76.92 | 76.92 |
KRH54552 | Soybean | extracellular | 71.15 | 69.81 |
KRH63343 | Soybean | extracellular | 70.19 | 68.87 |
AT1G74670.1 | Thale cress | extracellular | 61.54 | 63.37 |
GSMUA_Achr6P02710_001 | Banana | extracellular | 64.42 | 61.47 |
Bra008162.1-P | Field mustard | extracellular | 58.65 | 60.4 |
GSMUA_Achr7P18070_001 | Banana | extracellular | 62.5 | 59.63 |
TraesCS7D01G210500.1 | Wheat | extracellular | 53.85 | 59.57 |
CDY71845 | Canola | extracellular | 57.69 | 59.41 |
AT5G15230.1 | Thale cress | extracellular | 59.62 | 58.49 |
CDX70601 | Canola | extracellular | 59.62 | 58.49 |
CDX91001 | Canola | extracellular | 58.65 | 57.55 |
Bra023513.1-P | Field mustard | extracellular | 58.65 | 57.55 |
CDX85557 | Canola | extracellular | 58.65 | 57.55 |
TraesCS7B01G115300.1 | Wheat | extracellular | 53.85 | 56.57 |
OQU89489 | Sorghum | extracellular | 62.5 | 56.52 |
Os06t0266800-02 | Rice | extracellular | 58.65 | 55.45 |
TraesCS7A01G208100.1 | Wheat | extracellular | 53.85 | 55.45 |
Os09t0414900-01 | Rice | extracellular | 59.62 | 55.36 |
Solyc04g017720.2.1 | Tomato | extracellular | 60.58 | 55.26 |
Solyc11g011210.1.1 | Tomato | extracellular | 50.0 | 54.17 |
Solyc02g089350.2.1 | Tomato | nucleus | 56.73 | 52.68 |
HORVU5Hr1G065670.1 | Barley | extracellular | 56.73 | 52.21 |
TraesCS5A01G227000.1 | Wheat | extracellular | 55.77 | 51.79 |
TraesCS5B01G225600.1 | Wheat | extracellular | 54.81 | 50.89 |
TraesCS5D01G234400.1 | Wheat | extracellular | 53.85 | 50.45 |
Solyc06g007920.1.1 | Tomato | cytosol | 40.38 | 50.0 |
Solyc04g078200.2.1 | Tomato | extracellular | 30.77 | 49.23 |
EER89583 | Sorghum | extracellular | 52.88 | 48.25 |
EES16564 | Sorghum | extracellular | 57.69 | 47.24 |
Zm00001d023290_P001 | Maize | extracellular | 57.69 | 46.51 |
Solyc06g007910.2.1 | Tomato | extracellular, nucleus | 41.35 | 45.74 |
CDX78620 | Canola | cytosol | 54.81 | 40.71 |
Solyc06g007890.2.1 | Tomato | extracellular | 36.54 | 40.43 |
Solyc12g042500.1.1 | Tomato | extracellular | 33.65 | 39.77 |
Solyc01g107370.2.1 | Tomato | extracellular | 33.65 | 39.33 |
OQU77894 | Sorghum | extracellular | 50.0 | 37.96 |
Solyc12g042520.1.1 | Tomato | extracellular | 31.73 | 37.5 |
Solyc08g005620.2.1 | Tomato | extracellular | 30.77 | 35.96 |
Zm00001d038056_P001 | Maize | extracellular | 50.0 | 35.86 |
Os05t0376800-01 | Rice | extracellular | 49.04 | 33.55 |
HORVU7Hr1G042390.2 | Barley | cytosol | 50.0 | 21.58 |
Protein Annotations
EnsemblPlants:Solyc06g069790.2.1 | EnsemblPlantsGene:Solyc06g069790.2 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF22 | PFAM:PF02704 |
SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001D6B085 | UniProt:K4C8F1 | MapMan:11.10.2.1.1 |
Description
No Description!
Coordinates
chr6:-:43460150..43460960
Molecular Weight (calculated)
11482.4 Da
IEP (calculated)
9.600
GRAVY (calculated)
-0.182
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKIVSVLLL ALLVISMLAN TVMAANGKHH HYAKKYGPGS LKPSQCLPQC TRRCSKTQYH KPCMFFCQKC CNKCLCVPPG TYGNKAVCPC YNNWKTKEGG
101: PKCP
101: PKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.