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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • nucleus 1
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400083077 Potato extracellular 97.12 98.06
Solyc03g116060.2.1 Tomato extracellular 77.88 77.88
VIT_17s0000g06210.t01 Wine grape extracellular 76.92 76.92
KRH54552 Soybean extracellular 71.15 69.81
KRH63343 Soybean extracellular 70.19 68.87
AT1G74670.1 Thale cress extracellular 61.54 63.37
GSMUA_Achr6P02710_001 Banana extracellular 64.42 61.47
Bra008162.1-P Field mustard extracellular 58.65 60.4
GSMUA_Achr7P18070_001 Banana extracellular 62.5 59.63
TraesCS7D01G210500.1 Wheat extracellular 53.85 59.57
CDY71845 Canola extracellular 57.69 59.41
AT5G15230.1 Thale cress extracellular 59.62 58.49
CDX70601 Canola extracellular 59.62 58.49
CDX91001 Canola extracellular 58.65 57.55
Bra023513.1-P Field mustard extracellular 58.65 57.55
CDX85557 Canola extracellular 58.65 57.55
TraesCS7B01G115300.1 Wheat extracellular 53.85 56.57
OQU89489 Sorghum extracellular 62.5 56.52
Os06t0266800-02 Rice extracellular 58.65 55.45
TraesCS7A01G208100.1 Wheat extracellular 53.85 55.45
Os09t0414900-01 Rice extracellular 59.62 55.36
Solyc04g017720.2.1 Tomato extracellular 60.58 55.26
Solyc11g011210.1.1 Tomato extracellular 50.0 54.17
Solyc02g089350.2.1 Tomato nucleus 56.73 52.68
HORVU5Hr1G065670.1 Barley extracellular 56.73 52.21
TraesCS5A01G227000.1 Wheat extracellular 55.77 51.79
TraesCS5B01G225600.1 Wheat extracellular 54.81 50.89
TraesCS5D01G234400.1 Wheat extracellular 53.85 50.45
Solyc06g007920.1.1 Tomato cytosol 40.38 50.0
Solyc04g078200.2.1 Tomato extracellular 30.77 49.23
EER89583 Sorghum extracellular 52.88 48.25
EES16564 Sorghum extracellular 57.69 47.24
Zm00001d023290_P001 Maize extracellular 57.69 46.51
Solyc06g007910.2.1 Tomato extracellular, nucleus 41.35 45.74
CDX78620 Canola cytosol 54.81 40.71
Solyc06g007890.2.1 Tomato extracellular 36.54 40.43
Solyc12g042500.1.1 Tomato extracellular 33.65 39.77
Solyc01g107370.2.1 Tomato extracellular 33.65 39.33
OQU77894 Sorghum extracellular 50.0 37.96
Solyc12g042520.1.1 Tomato extracellular 31.73 37.5
Solyc08g005620.2.1 Tomato extracellular 30.77 35.96
Zm00001d038056_P001 Maize extracellular 50.0 35.86
Os05t0376800-01 Rice extracellular 49.04 33.55
HORVU7Hr1G042390.2 Barley cytosol 50.0 21.58
Protein Annotations
EnsemblPlants:Solyc06g069790.2.1EnsemblPlantsGene:Solyc06g069790.2InterPro:GASAPANTHER:PTHR23201PANTHER:PTHR23201:SF22PFAM:PF02704
SEG:segSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001D6B085UniProt:K4C8F1MapMan:11.10.2.1.1
Description
No Description!
Coordinates
chr6:-:43460150..43460960
Molecular Weight (calculated)
11482.4 Da
IEP (calculated)
9.600
GRAVY (calculated)
-0.182
Length
104 amino acids
Sequence
(BLAST)
001: MAKIVSVLLL ALLVISMLAN TVMAANGKHH HYAKKYGPGS LKPSQCLPQC TRRCSKTQYH KPCMFFCQKC CNKCLCVPPG TYGNKAVCPC YNNWKTKEGG
101: PKCP
Best Arabidopsis Sequence Match ( AT1G74670.1 )
(BLAST)
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.