Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | CDY17621 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | CDX95198 | AT5G42220.1 | 21798944 |
| AT5G15230.1 | CDX95199 | AT5G42220.1 | 21798944 |
| AT5G15230.1 | CDY42355 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70601 | Canola | extracellular | 57.86 | 76.42 |
| CDX85557 | Canola | extracellular | 55.71 | 73.58 |
| CDX91001 | Canola | extracellular | 55.71 | 73.58 |
| AT5G15230.1 | Thale cress | extracellular | 51.43 | 67.92 |
| CDY14668 | Canola | cytosol | 32.14 | 60.81 |
| KRH01173 | Soybean | extracellular | 43.57 | 57.01 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 42.86 | 56.6 |
| KRG93532 | Soybean | extracellular | 43.57 | 55.45 |
| PGSC0003DMT400083077 | Potato | extracellular | 40.71 | 55.34 |
| KRH40097 | Soybean | extracellular | 42.14 | 55.14 |
| Solyc06g069790.2.1 | Tomato | extracellular | 40.71 | 54.81 |
| KRH63343 | Soybean | extracellular | 41.43 | 54.72 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 40.0 | 53.85 |
| PGSC0003DMT400050285 | Potato | extracellular | 39.29 | 52.88 |
| KRH54552 | Soybean | extracellular | 40.0 | 52.83 |
| CDY71845 | Canola | extracellular | 37.86 | 52.48 |
| Solyc03g116060.2.1 | Tomato | extracellular | 38.57 | 51.92 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 33.57 | 50.0 |
| GSMUA_Achr6P02710_001 | Banana | extracellular | 36.43 | 46.79 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 33.57 | 46.53 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 32.86 | 46.46 |
| CDY18069 | Canola | extracellular | 34.29 | 46.15 |
| GSMUA_Achr7P18070_001 | Banana | extracellular | 35.71 | 45.87 |
| CDY46336 | Canola | extracellular | 33.57 | 45.19 |
| Os09t0414900-01 | Rice | extracellular | 35.71 | 44.64 |
| Os06t0266800-02 | Rice | extracellular | 35.0 | 44.55 |
| CDY41324 | Canola | cytosol | 34.29 | 43.24 |
| EER89583 | Sorghum | extracellular | 35.0 | 42.98 |
| OQU89489 | Sorghum | extracellular | 35.0 | 42.61 |
| CDY27104 | Canola | extracellular | 31.43 | 41.9 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 32.86 | 41.07 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 32.86 | 40.71 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 32.14 | 40.54 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 32.14 | 40.18 |
| CDY00909 | Canola | extracellular | 33.57 | 39.5 |
| CDY20617 | Canola | extracellular | 24.29 | 38.64 |
| CDY20958 | Canola | extracellular | 24.29 | 38.64 |
| CDY60168 | Canola | extracellular | 32.86 | 38.33 |
| CDY22221 | Canola | extracellular | 35.0 | 38.28 |
| Zm00001d023290_P001 | Maize | extracellular | 35.0 | 37.98 |
| EES16564 | Sorghum | extracellular | 34.29 | 37.8 |
| CDX71072 | Canola | extracellular | 23.57 | 36.26 |
| CDX88727 | Canola | extracellular | 23.57 | 36.26 |
| CDY72009 | Canola | extracellular | 22.14 | 35.23 |
| CDX93402 | Canola | endoplasmic reticulum, extracellular | 22.86 | 34.04 |
| CDY09248 | Canola | extracellular | 21.43 | 33.71 |
| CDY31590 | Canola | extracellular | 22.14 | 33.7 |
| CDY31591 | Canola | extracellular | 22.14 | 33.7 |
| CDX80223 | Canola | extracellular | 22.14 | 33.7 |
| CDY22975 | Canola | extracellular | 22.14 | 31.96 |
| CDX80222 | Canola | extracellular | 20.71 | 31.52 |
| OQU77894 | Sorghum | extracellular | 30.0 | 30.66 |
| Zm00001d038056_P001 | Maize | extracellular | 31.43 | 30.34 |
| CDY50148 | Canola | extracellular | 18.57 | 27.08 |
| Os05t0376800-01 | Rice | extracellular | 29.29 | 26.97 |
| CDX93153 | Canola | extracellular | 20.0 | 26.42 |
| CDX89647 | Canola | extracellular | 20.0 | 26.42 |
| CDY52417 | Canola | extracellular | 19.29 | 25.0 |
| CDY54472 | Canola | extracellular | 19.29 | 24.77 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 32.14 | 18.67 |
Protein Annotations
| EnsemblPlants:CDX78620 | EnsemblPlantsGene:GSBRNA2T00130034001 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF21 | PFAM:PF02704 |
| ProteinID:CDX78620 | ProteinID:CDX78620.1 | UniParc:UPI0004EDAEBB | MapMan:11.10.2.1.1 | : | : |
Description
BnaA03g05320D
Coordinates
chrLK031815:+:1560511..1561746
Molecular Weight (calculated)
15961.4 Da
IEP (calculated)
9.010
GRAVY (calculated)
-0.438
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MVITICTAAR NNLVEATECV YIAYMQHHRV LNQNSSLIIW NSLPPGPHCL LLASNHGYGL KWIRVKYNPK RYGPGSLKRS QCPKECDRRC SQTQYHNACI
101: LFCNKCCRKC LCVPPGYYGN KQVCSCYNNW KTQEGGPKCP
101: LFCNKCCRKC LCVPPGYYGN KQVCSCYNNW KTQEGGPKCP
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.