Factsheet for PGSC0003DMT400050285

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400025616
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT5G15230.1	PGSC0003DMT400025616	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116060.2.1	Tomato	extracellular	99.04	99.04
PGSC0003DMT400083077	Potato	extracellular	78.85	79.61
VIT_17s0000g06210.t01	Wine grape	extracellular	78.85	78.85
KRH63343	Soybean	extracellular	71.15	69.81
KRH54552	Soybean	extracellular	71.15	69.81
GSMUA_Achr6P02710_001	Banana	extracellular	64.42	61.47
GSMUA_Achr7P18070_001	Banana	extracellular	63.46	60.55
AT1G74670.1	Thale cress	extracellular	57.69	59.41
TraesCS7D01G210500.1	Wheat	extracellular	52.88	58.51
Bra008162.1-P	Field mustard	extracellular	56.73	58.42
CDY71845	Canola	extracellular	55.77	57.43
Os09t0414900-01	Rice	extracellular	61.54	57.14
AT5G15230.1	Thale cress	extracellular	56.73	55.66
OQU89489	Sorghum	extracellular	61.54	55.65
CDX70601	Canola	extracellular	55.77	54.72
TraesCS7B01G115300.1	Wheat	extracellular	51.92	54.55
PGSC0003DMT400040585	Potato	extracellular	50.0	54.17
CDX91001	Canola	extracellular	54.81	53.77
CDX85557	Canola	extracellular	54.81	53.77
Bra023513.1-P	Field mustard	extracellular	54.81	53.77
TraesCS7A01G208100.1	Wheat	extracellular	51.92	53.47
PGSC0003DMT400019726	Potato	extracellular	56.73	51.75
HORVU5Hr1G065670.1	Barley	extracellular	55.77	51.33
TraesCS5D01G234400.1	Wheat	extracellular	53.85	50.45
EER89583	Sorghum	extracellular	54.81	50.0
TraesCS5B01G225600.1	Wheat	extracellular	52.88	49.11
TraesCS5A01G227000.1	Wheat	extracellular	52.88	49.11
Os06t0266800-02	Rice	extracellular	51.92	49.09
PGSC0003DMT400003089	Potato	extracellular	43.27	47.87
Zm00001d023290_P001	Maize	extracellular	54.81	44.19
EES16564	Sorghum	extracellular	52.88	43.31
PGSC0003DMT400055426	Potato	extracellular	33.65	39.77
PGSC0003DMT400037423	Potato	extracellular	33.65	39.77
PGSC0003DMT400003086	Potato	extracellular	35.58	39.36
CDX78620	Canola	cytosol	52.88	39.29
PGSC0003DMT400066182	Potato	extracellular	32.69	38.2
OQU77894	Sorghum	extracellular	49.04	37.23
PGSC0003DMT400047535	Potato	extracellular	30.77	35.96
Zm00001d038056_P001	Maize	extracellular	48.08	34.48
Os05t0376800-01	Rice	extracellular	48.08	32.89
HORVU7Hr1G042390.2	Barley	cytosol	50.0	21.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400050285	EnsemblPlantsGene:PGSC0003DMG401019533	EntrezGene:102600781	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF22
PFAM:PF02704	PGSC:PGSC0003DMG401019533	RefSeq:XP_006364599.1	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029682E2
UniProt:M1BQ28	MapMan:11.10.2.1.1	:	:	:	:

Description

Gip1 [Source:PGSC_GENE;Acc:PGSC0003DMG401019533]

Coordinates

chr3:-:55843853..55845734

Molecular Weight (calculated)

11523.3 Da

IEP (calculated)

9.100

GRAVY (calculated)

-0.105

Length

104 amino acids

Sequence
(BLAST)

001: MAKVVSFFLL ALIAISMVAT TALAADAQYH LDRSRYGPGS LKPTQCLPQC TRRCSKTQYH KPCMFFCQKC CKTCLCVPPG FYGNKGVCPC YNNWKTKEGG
101: PKCP

Best Arabidopsis Sequence Match ( AT1G74670.1 )
(BLAST)

001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P

Arabidopsis Description

GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.