Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042500.1.1 | Tomato | extracellular | 94.32 | 94.32 |
| PGSC0003DMT400055426 | Potato | extracellular | 76.14 | 76.14 |
| GSMUA_Achr6P07810_001 | Banana | cytosol | 38.64 | 72.34 |
| PGSC0003DMT400047535 | Potato | extracellular | 63.64 | 62.92 |
| TraesCS5D01G408000.1 | Wheat | extracellular | 67.05 | 62.77 |
| TraesCS5A01G398500.1 | Wheat | extracellular | 65.91 | 61.7 |
| TraesCS5B01G403500.1 | Wheat | extracellular | 65.91 | 61.7 |
| GSMUA_Achr10P... | Banana | extracellular | 63.64 | 60.87 |
| TraesCS5A01G398600.1 | Wheat | endoplasmic reticulum, extracellular | 65.91 | 60.42 |
| Os03t0760800-01 | Rice | extracellular | 63.64 | 60.22 |
| PGSC0003DMT400066182 | Potato | extracellular | 60.23 | 59.55 |
| GSMUA_Achr6P11160_001 | Banana | extracellular | 61.36 | 59.34 |
| GSMUA_Achr10P... | Banana | extracellular | 61.36 | 59.34 |
| GSMUA_Achr6P02260_001 | Banana | extracellular | 60.23 | 58.24 |
| TraesCS5D01G408100.1 | Wheat | endoplasmic reticulum, extracellular | 64.77 | 58.16 |
| EER90847 | Sorghum | extracellular | 61.36 | 58.06 |
| TraesCS5B01G403600.1 | Wheat | endoplasmic reticulum, extracellular | 63.64 | 57.14 |
| GSMUA_Achr5P16080_001 | Banana | extracellular | 50.0 | 56.41 |
| TraesCS5A01G398700.1 | Wheat | endoplasmic reticulum, extracellular | 62.5 | 56.12 |
| Zm00001d013222_P001 | Maize | extracellular | 60.23 | 55.21 |
| PGSC0003DMT400003089 | Potato | extracellular | 47.73 | 44.68 |
| PGSC0003DMT400003086 | Potato | extracellular | 44.32 | 41.49 |
| PGSC0003DMT400040585 | Potato | extracellular | 38.64 | 35.42 |
| PGSC0003DMT400019726 | Potato | extracellular | 44.32 | 34.21 |
| PGSC0003DMT400083077 | Potato | extracellular | 39.77 | 33.98 |
| PGSC0003DMT400050285 | Potato | extracellular | 39.77 | 33.65 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400037423 | EnsemblPlantsGene:PGSC0003DMG400014441 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF10 | PFAM:PF02704 |
| PGSC:PGSC0003DMG400014441 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002953C12 | UniProt:M1B5D4 |
| MapMan:11.10.2.1.1 | : | : | : | : | : |
Description
Snakin-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014441]
Coordinates
chr12:-:49371055..49372039
Molecular Weight (calculated)
9549.6 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.185
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MKLNFATLLL VALVLTSFLI PATIAGSDFC DSKCNYRCSK AGRQDRCLKY CGICCTECHC VPSGTSGNKD ECPCYRDKKN SKGGPKCP
1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP
Arabidopsis Description
GASA10Gibberellin-regulated protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFM2]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.