Factsheet for GSMUA_Achr6P07810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078200.2.1	Tomato	extracellular	80.85	58.46
GSMUA_Achr5P16080_001	Banana	extracellular	78.72	47.44
PGSC0003DMT400055426	Potato	extracellular	80.85	43.18
VIT_18s0001g09460.t01	Wine grape	extracellular	74.47	39.77
VIT_03s0091g00390.t01	Wine grape	extracellular	74.47	39.77
Bra019917.1-P	Field mustard	cytosol	55.32	39.39
Solyc12g042520.1.1	Tomato	extracellular	72.34	38.64
Solyc12g042500.1.1	Tomato	extracellular	72.34	38.64
KRH52061	Soybean	extracellular	72.34	38.64
PGSC0003DMT400037423	Potato	extracellular	72.34	38.64
AT5G59845.1	Thale cress	extracellular	72.34	38.2
Bra020281.1-P	Field mustard	extracellular	70.21	37.93
KRG91068	Soybean	extracellular	72.34	37.78
KRH35705	Soybean	extracellular	72.34	37.78
Solyc08g005620.2.1	Tomato	extracellular	70.21	37.08
CDY09248	Canola	extracellular	70.21	37.08
GSMUA_Achr6P02260_001	Banana	extracellular	70.21	36.26
GSMUA_Achr10P...	Banana	extracellular	70.21	36.26
GSMUA_Achr6P11160_001	Banana	extracellular	70.21	36.26
PGSC0003DMT400047535	Potato	extracellular	68.09	35.96
CDY31590	Canola	extracellular	70.21	35.87
CDY31591	Canola	extracellular	70.21	35.87
CDX80223	Canola	extracellular	70.21	35.87
Bra002526.1-P	Field mustard	extracellular	70.21	35.87
GSMUA_Achr11P...	Banana	cytosol	55.32	35.62
CDY20958	Canola	extracellular	65.96	35.23
CDY20617	Canola	extracellular	65.96	35.23
KRH15429	Soybean	extracellular	65.96	35.23
KRH05612	Soybean	extracellular	65.96	35.23
CDX88727	Canola	extracellular	68.09	35.16
CDX71072	Canola	extracellular	68.09	35.16
Bra002525.1-P	Field mustard	extracellular	68.09	34.78
CDX80222	Canola	extracellular	68.09	34.78
PGSC0003DMT400066182	Potato	extracellular	63.83	33.71
Solyc01g107370.2.1	Tomato	extracellular	63.83	33.71
GSMUA_Achr10P...	Banana	extracellular	65.96	33.7
AT2G39540.1	Thale cress	extracellular	61.7	33.33
AT1G10588.1	Thale cress	extracellular	63.83	33.33
CDY50148	Canola	extracellular	68.09	33.33
Bra013115.1-P	Field mustard	extracellular	74.47	33.02
CDX89647	Canola	extracellular	74.47	33.02
CDX93153	Canola	extracellular	74.47	33.02
Bra039830.1-P	Field mustard	extracellular	72.34	31.78
CDY52417	Canola	extracellular	72.34	31.48
CDY54472	Canola	extracellular	72.34	31.19
CDY22975	Canola	extracellular	63.83	30.93
CDY72009	Canola	extracellular	57.45	30.68
AT2G14900.1	Thale cress	extracellular	65.96	28.7
CDX93402	Canola	endoplasmic reticulum, extracellular	55.32	27.66
VIT_07s0129g00580.t01	Wine grape	extracellular	72.34	26.77
GSMUA_Achr6P02710_001	Banana	extracellular	48.94	21.1
GSMUA_Achr7P18070_001	Banana	extracellular	48.94	21.1
GSMUA_Achr7P21680_001	Banana	extracellular	42.55	19.61
GSMUA_Achr8P22060_001	Banana	extracellular	46.81	18.18
GSMUA_Achr9P27170_001	Banana	endoplasmic reticulum, extracellular, plastid	48.94	18.11
GSMUA_Achr4P02320_001	Banana	extracellular	42.55	17.39
GSMUA_Achr11P...	Banana	extracellular	44.68	16.67

Protein Annotations

EnsemblPlants:GSMUA_Achr6P07810_001	EnsemblPlants:GSMUA_Achr6T07810_001	EnsemblPlantsGene:GSMUA_Achr6G07810_001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF10
PFAM:PF02704	SEG:seg	UniParc:UPI0002947E9C	UniProt:M0T530	MapMan:11.10.2.1.1	:

Description

Snakin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07810_001]

Coordinates

chr6:+:5272672..5272815

Molecular Weight (calculated)

5426.5 Da

IEP (calculated)

7.898

GRAVY (calculated)

-1.009

Length

47 amino acids

Sequence
(BLAST)

1: MDRCLYYCGM CCEECKCVPS GTYGNKDECP CYRDKVTKDD KKKSKCP

Best Arabidopsis Sequence Match ( AT5G59845.1 )
(BLAST)

1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP

Arabidopsis Description

GASA10Gibberellin-regulated protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFM2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.