Factsheet for GSMUA_Achr6P02710_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001
GSMUA_Achr5P18990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT5G15230.1	GSMUA_Achr5P18990_001	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P18070_001	Banana	extracellular	87.16	87.16
VIT_17s0000g06210.t01	Wine grape	extracellular	67.89	71.15
VIT_14s0108g00740.t01	Wine grape	extracellular	64.22	66.04
PGSC0003DMT400083077	Potato	extracellular	62.39	66.02
Solyc03g116060.2.1	Tomato	extracellular	62.39	65.38
PGSC0003DMT400050285	Potato	extracellular	61.47	64.42
Solyc06g069790.2.1	Tomato	extracellular	61.47	64.42
KRG93532	Soybean	extracellular	64.22	63.64
KRH54552	Soybean	extracellular	61.47	63.21
GSMUA_Achr11P...	Banana	cytosol	42.2	63.01
KRH01173	Soybean	extracellular	61.47	62.62
AT1G74670.1	Thale cress	extracellular	56.88	61.39
KRH40097	Soybean	extracellular	59.63	60.75
KRH63343	Soybean	extracellular	57.8	59.43
Bra008162.1-P	Field mustard	extracellular	53.21	57.43
GSMUA_Achr7P21680_001	Banana	extracellular	53.21	56.86
CDY71845	Canola	extracellular	52.29	56.44
AT5G15230.1	Thale cress	extracellular	51.38	52.83
CDX91001	Canola	extracellular	51.38	52.83
CDX85557	Canola	extracellular	51.38	52.83
CDX70601	Canola	extracellular	51.38	52.83
Bra023513.1-P	Field mustard	extracellular	51.38	52.83
GSMUA_Achr6P07810_001	Banana	cytosol	21.1	48.94
GSMUA_Achr5P16080_001	Banana	extracellular	31.19	43.59
GSMUA_Achr8P22060_001	Banana	extracellular	47.71	42.98
GSMUA_Achr10P...	Banana	extracellular	35.78	42.86
GSMUA_Achr4P02320_001	Banana	extracellular	44.95	42.61
GSMUA_Achr6P02260_001	Banana	extracellular	34.86	41.76
GSMUA_Achr10P...	Banana	extracellular	34.86	41.3
GSMUA_Achr6P11160_001	Banana	extracellular	33.95	40.66
GSMUA_Achr11P...	Banana	extracellular	44.95	38.89
CDX78620	Canola	cytosol	46.79	36.43
GSMUA_Achr9P27170_001	Banana	endoplasmic reticulum, extracellular, plastid	40.37	34.65

Protein Annotations

EnsemblPlants:GSMUA_Achr6P02710_001	EnsemblPlants:GSMUA_Achr6T02710_001	EnsemblPlantsGene:GSMUA_Achr6G02710_001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF23
PFAM:PF02704	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000294CA75	UniProt:M0T3L9	MapMan:11.10.2.1.1

Description

Gibberellin-regulated protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02710_001]

Coordinates

chr6:+:1762586..1763665

Molecular Weight (calculated)

12146.0 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.240

Length

109 amino acids

Sequence
(BLAST)

001: MAKLVVLLAI ALLAISMADS GYKVLAKEIK HSEGEYMLTS NGRGTLQTYQ CPSQCSRRCS KTQYHKPCMF FCQKCCIKCL CVPSGFYGNK GECPCYNNWK
101: TKRGGPKCP

Best Arabidopsis Sequence Match ( AT1G74670.1 )
(BLAST)

001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P

Arabidopsis Description

GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.