Factsheet for Bra023513.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P
Bra027974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G15230.1	Bra024840.1-P	AT2G01950.1	19000166
AT5G15230.1	Bra027974.1-P	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91001	Canola	extracellular	100.0	100.0
CDX85557	Canola	extracellular	100.0	100.0
AT5G15230.1	Thale cress	extracellular	82.08	82.08
VIT_17s0000g06210.t01	Wine grape	extracellular	60.38	61.54
KRH63343	Soybean	extracellular	61.32	61.32
VIT_14s0108g00740.t01	Wine grape	extracellular	61.32	61.32
KRG93532	Soybean	extracellular	62.26	60.0
KRH01173	Soybean	extracellular	60.38	59.81
KRH54552	Soybean	extracellular	59.43	59.43
PGSC0003DMT400083077	Potato	extracellular	57.55	59.22
Solyc06g069790.2.1	Tomato	extracellular	57.55	58.65
KRH40097	Soybean	extracellular	58.49	57.94
Bra008162.1-P	Field mustard	extracellular	54.72	57.43
TraesCS7D01G210500.1	Wheat	extracellular	50.0	56.38
Solyc03g116060.2.1	Tomato	extracellular	54.72	55.77
PGSC0003DMT400050285	Potato	extracellular	53.77	54.81
TraesCS7B01G115300.1	Wheat	extracellular	50.0	53.54
Os06t0266800-02	Rice	extracellular	54.72	52.73
TraesCS7A01G208100.1	Wheat	extracellular	50.0	52.48
GSMUA_Achr6P02710_001	Banana	extracellular	52.83	51.38
GSMUA_Achr7P18070_001	Banana	extracellular	51.89	50.46
OQU89489	Sorghum	extracellular	51.89	47.83
Os09t0414900-01	Rice	extracellular	50.0	47.32
Bra019917.1-P	Field mustard	cytosol	29.25	46.97
Bra021407.1-P	Field mustard	extracellular	42.45	46.88
TraesCS5A01G227000.1	Wheat	extracellular	49.06	46.43
HORVU5Hr1G065670.1	Barley	extracellular	49.06	46.02
TraesCS5D01G234400.1	Wheat	extracellular	48.11	45.95
EER89583	Sorghum	extracellular	49.06	45.61
TraesCS5B01G225600.1	Wheat	extracellular	48.11	45.54
Zm00001d023290_P001	Maize	extracellular	53.77	44.19
EES16564	Sorghum	extracellular	50.94	42.52
Bra020281.1-P	Field mustard	extracellular	30.19	36.78
Bra002526.1-P	Field mustard	extracellular	31.13	35.87
OQU77894	Sorghum	extracellular	45.28	35.04
Bra002525.1-P	Field mustard	extracellular	30.19	34.78
Zm00001d038056_P001	Maize	extracellular	45.28	33.1
Os05t0376800-01	Rice	extracellular	43.4	30.26
Bra039830.1-P	Field mustard	extracellular	28.3	28.04
Bra013115.1-P	Field mustard	extracellular	26.42	26.42
HORVU7Hr1G042390.2	Barley	cytosol	45.28	19.92

Protein Annotations

EnsemblPlants:Bra023513.1	EnsemblPlants:Bra023513.1-P	EnsemblPlantsGene:Bra023513	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009719	GO:GO:0009739	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:GASA
PANTHER:PTHR23201	PANTHER:PTHR23201:SF21	PFAM:PF02704	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000254364A	UniProt:M4E410	MapMan:11.10.2.1.1	:	:	:

Description

AT5G15230 (E=7e-048) GASA4 | GASA4 (GAST1 PROTEIN HOMOLOG 4)

Coordinates

chrA02:+:3715274..3716239

Molecular Weight (calculated)

11705.4 Da

IEP (calculated)

9.270

GRAVY (calculated)

-0.331

Length

106 amino acids

Sequence
(BLAST)

001: MAKSCGALFL LALVVFSLLQ TMVMASSGSG GKYNPKRYGP GSLKRSQCPK ECDRRCSQTQ YHNACILFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQQ
101: GGPKCP

Best Arabidopsis Sequence Match ( AT5G15230.1 )
(BLAST)

001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP

Arabidopsis Description

GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.