CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG25466
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	OQU92006	AT2G01950.1	19000166
AT5G15230.1	KXG25466	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G208100.1	Wheat	extracellular	68.42	77.23
TraesCS7B01G115300.1	Wheat	extracellular	65.79	75.76
TraesCS7D01G210500.1	Wheat	extracellular	62.28	75.53
Os06t0266800-02	Rice	extracellular	71.93	74.55
PGSC0003DMT400050285	Potato	extracellular	50.0	54.81
Solyc03g116060.2.1	Tomato	extracellular	49.12	53.85
PGSC0003DMT400083077	Potato	extracellular	48.25	53.4
Solyc06g069790.2.1	Tomato	extracellular	48.25	52.88
VIT_17s0000g06210.t01	Wine grape	extracellular	46.49	50.96
AT1G74670.1	Thale cress	extracellular	44.74	50.49
OQU89489	Sorghum	extracellular	50.88	50.43
AT5G15230.1	Thale cress	extracellular	46.49	50.0
VIT_14s0108g00740.t01	Wine grape	extracellular	46.49	50.0
CDX70601	Canola	extracellular	46.49	50.0
KRG93532	Soybean	extracellular	47.37	49.09
KRH63343	Soybean	extracellular	45.61	49.06
Bra023513.1-P	Field mustard	extracellular	45.61	49.06
CDX85557	Canola	extracellular	45.61	49.06
CDX91001	Canola	extracellular	45.61	49.06
KRH40097	Soybean	extracellular	45.61	48.6
KRH01173	Soybean	extracellular	44.74	47.66
KXG38749	Sorghum	extracellular	43.86	47.62
Bra008162.1-P	Field mustard	extracellular	42.11	47.52
CDY71845	Canola	extracellular	42.11	47.52
KRH54552	Soybean	extracellular	42.98	46.23
GSMUA_Achr8P22060_001	Banana	extracellular	48.25	45.45
EES16564	Sorghum	extracellular	47.37	42.52
OQU77894	Sorghum	extracellular	48.25	40.15
EER90847	Sorghum	extracellular	31.58	38.71
CDX78620	Canola	cytosol	42.98	35.0
HORVU7Hr1G042390.2	Barley	cytosol	67.54	31.95

Protein Annotations

MapMan:11.10.2.1.1	EntrezGene:8065781	UniProt:C5Z8E8	EnsemblPlants:EER89583	ProteinID:EER89583	ProteinID:EER89583.1
InterPro:GASA	GO:GO:0005575	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009506
GO:GO:0009628	GO:GO:0009719	GO:GO:0009751	GO:GO:0010286	PFAM:PF02704	PANTHER:PTHR23201
PANTHER:PTHR23201:SF22	EnsemblPlantsGene:SORBI_3010G111200	unigene:Sbi.10900	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A89A1F
RefSeq:XP_002438216.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:11197868..11198820

Molecular Weight (calculated)

11547.1 Da

IEP (calculated)

9.311

GRAVY (calculated)

-0.079

Length

114 amino acids

Sequence
(BLAST)

001: MASKVVSILV LAFLLLAAVA VPVSAGPRQR GKNGGGGAGG GGGSPSGGGN LKPWECSPKC ASRCSQTQYK KACLTFCNKC CATCLCVPPG FYGNKGACPC
101: YNNWKTKEGG PKCP

Best Arabidopsis Sequence Match ( AT5G15230.1 )
(BLAST)

001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP

Arabidopsis Description

GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.