Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KXG25466 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023290_P001 | Maize | extracellular | 77.95 | 76.74 |
| PGSC0003DMT400083077 | Potato | extracellular | 47.24 | 58.25 |
| Solyc06g069790.2.1 | Tomato | extracellular | 47.24 | 57.69 |
| Bra008162.1-P | Field mustard | extracellular | 45.67 | 57.43 |
| CDY71845 | Canola | extracellular | 44.88 | 56.44 |
| AT1G74670.1 | Thale cress | extracellular | 44.09 | 55.45 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 44.88 | 54.81 |
| Solyc03g116060.2.1 | Tomato | extracellular | 44.09 | 53.85 |
| PGSC0003DMT400050285 | Potato | extracellular | 43.31 | 52.88 |
| KRH54552 | Soybean | extracellular | 43.31 | 51.89 |
| OQU89489 | Sorghum | extracellular | 46.46 | 51.3 |
| CDX85557 | Canola | extracellular | 42.52 | 50.94 |
| CDX91001 | Canola | extracellular | 42.52 | 50.94 |
| Bra023513.1-P | Field mustard | extracellular | 42.52 | 50.94 |
| KRH63343 | Soybean | extracellular | 42.52 | 50.94 |
| KRG93532 | Soybean | extracellular | 44.09 | 50.91 |
| KRH01173 | Soybean | extracellular | 42.52 | 50.47 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 48.03 | 50.41 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 41.73 | 50.0 |
| CDX70601 | Canola | extracellular | 41.73 | 50.0 |
| KRH40097 | Soybean | extracellular | 41.73 | 49.53 |
| KXG38749 | Sorghum | extracellular | 40.94 | 49.52 |
| AT5G15230.1 | Thale cress | extracellular | 40.16 | 48.11 |
| EER89583 | Sorghum | extracellular | 42.52 | 47.37 |
| OQU77894 | Sorghum | extracellular | 47.24 | 43.8 |
| EER90847 | Sorghum | extracellular | 29.92 | 40.86 |
| CDX78620 | Canola | cytosol | 37.8 | 34.29 |
Protein Annotations
| EnsemblPlants:EES16564 | EnsemblPlantsGene:SORBI_3008G020800 | EntrezGene:8071304 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF40 |
| PFAM:PF02704 | ProteinID:EES16564 | ProteinID:EES16564.1 | RefSeq:XP_002442726.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | unigene:Sbi.18306 | UniParc:UPI0001A88441 | UniProt:C5YQS2 | MapMan:11.10.2.1.1 | : |
Description
hypothetical protein
Coordinates
chr8:-:1815273..1820116
Molecular Weight (calculated)
13649.4 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.688
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTKNKVAAL LLCFLVLAAI VSAEIIDANG VDDDDGGDEE QLDKGGSGGH HNHKGHNKDG KGNLKPSQCG GECKRRCSKT HHKKPCLFFC NKCCAKCLCV
101: PPGTYGNKDT CPCYNNWKTK RGGPKCP
101: PPGTYGNKDT CPCYNNWKTK RGGPKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.