Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KRH58580 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KRH06004 | AT5G42220.1 | 21798944 |
| AT5G15230.1 | KRH17506 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63343 | Soybean | extracellular | 90.57 | 90.57 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 75.47 | 76.92 |
| Solyc03g116060.2.1 | Tomato | extracellular | 70.75 | 72.12 |
| PGSC0003DMT400050285 | Potato | extracellular | 69.81 | 71.15 |
| Solyc06g069790.2.1 | Tomato | extracellular | 69.81 | 71.15 |
| PGSC0003DMT400083077 | Potato | extracellular | 68.87 | 70.87 |
| KRG93532 | Soybean | extracellular | 67.92 | 65.45 |
| KRH01173 | Soybean | extracellular | 66.04 | 65.42 |
| KRH40097 | Soybean | extracellular | 65.09 | 64.49 |
| GSMUA_Achr6P02710_001 | Banana | extracellular | 63.21 | 61.47 |
| GSMUA_Achr7P18070_001 | Banana | extracellular | 62.26 | 60.55 |
| CDX70601 | Canola | extracellular | 59.43 | 59.43 |
| CDX85557 | Canola | extracellular | 59.43 | 59.43 |
| CDX91001 | Canola | extracellular | 59.43 | 59.43 |
| Bra023513.1-P | Field mustard | extracellular | 59.43 | 59.43 |
| AT1G74670.1 | Thale cress | extracellular | 56.6 | 59.41 |
| Bra008162.1-P | Field mustard | extracellular | 56.6 | 59.41 |
| CDY71845 | Canola | extracellular | 55.66 | 58.42 |
| AT5G15230.1 | Thale cress | extracellular | 57.55 | 57.55 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 49.06 | 55.32 |
| KRH17367 | Soybean | endoplasmic reticulum, extracellular | 48.11 | 52.58 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 49.06 | 52.53 |
| OQU89489 | Sorghum | extracellular | 56.6 | 52.17 |
| Os09t0414900-01 | Rice | extracellular | 54.72 | 51.79 |
| KRH73005 | Soybean | endoplasmic reticulum, extracellular | 47.17 | 51.55 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 49.06 | 51.49 |
| KRH18123 | Soybean | extracellular | 41.51 | 47.31 |
| KRH18120 | Soybean | extracellular | 41.51 | 47.31 |
| Os06t0266800-02 | Rice | extracellular | 48.11 | 46.36 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 49.06 | 46.02 |
| KRG97330 | Soybean | extracellular | 39.62 | 45.65 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 48.11 | 45.54 |
| KRH52061 | Soybean | extracellular | 37.74 | 45.45 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 47.17 | 45.05 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 47.17 | 44.64 |
| Zm00001d023290_P001 | Maize | extracellular | 52.83 | 43.41 |
| EES16564 | Sorghum | extracellular | 51.89 | 43.31 |
| KRH15429 | Soybean | extracellular | 35.85 | 43.18 |
| KRH05612 | Soybean | extracellular | 35.85 | 43.18 |
| EER89583 | Sorghum | extracellular | 46.23 | 42.98 |
| KRG95149 | Soybean | extracellular | 51.89 | 40.15 |
| CDX78620 | Canola | cytosol | 52.83 | 40.0 |
| KRH66831 | Soybean | extracellular | 50.94 | 39.13 |
| KRH35705 | Soybean | extracellular | 32.08 | 37.78 |
| KRG91068 | Soybean | extracellular | 32.08 | 37.78 |
| OQU77894 | Sorghum | extracellular | 47.17 | 36.5 |
| Zm00001d038056_P001 | Maize | extracellular | 47.17 | 34.48 |
| Os05t0376800-01 | Rice | extracellular | 46.23 | 32.24 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 45.28 | 19.92 |
Protein Annotations
| EMBL:ACUP02003541 | EnsemblPlants:KRH54552 | EnsemblPlantsGene:GLYMA_06G193800 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF22 |
| PFAM:PF02704 | ProteinID:KRH54552 | ProteinID:KRH54552.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001FC8905 |
| UniProt:I1KCT2 | MapMan:11.10.2.1.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:17277972..17279430
Molecular Weight (calculated)
11750.5 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.117
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAKLVCVL LLAFLGISMI TTQVMATDSA YHLDGRSYGP GSLKTSQCPS ECTRRCSQTQ YHKPCMFFCQ ECCKVCLCVP PGYYGNKSVC PCYNNWKNKR
101: GGPKCP
101: GGPKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.