Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 | |
| HORVU6Hr1G002580.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | HORVU6Hr1G002580.6 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G227000.1 | Wheat | extracellular | 92.92 | 93.75 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 91.15 | 91.96 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 88.5 | 90.09 |
| Os09t0414900-01 | Rice | extracellular | 77.88 | 78.57 |
| OQU89489 | Sorghum | extracellular | 74.34 | 73.04 |
| PGSC0003DMT400083077 | Potato | extracellular | 53.1 | 58.25 |
| Solyc06g069790.2.1 | Tomato | extracellular | 52.21 | 56.73 |
| Solyc03g116060.2.1 | Tomato | extracellular | 52.21 | 56.73 |
| KRH40097 | Soybean | extracellular | 53.1 | 56.07 |
| PGSC0003DMT400050285 | Potato | extracellular | 51.33 | 55.77 |
| KRG93532 | Soybean | extracellular | 53.98 | 55.45 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 50.44 | 54.81 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 51.33 | 54.72 |
| CDY71845 | Canola | extracellular | 48.67 | 54.46 |
| Bra008162.1-P | Field mustard | extracellular | 48.67 | 54.46 |
| AT1G74670.1 | Thale cress | extracellular | 48.67 | 54.46 |
| KRH01173 | Soybean | extracellular | 51.33 | 54.21 |
| CDX70601 | Canola | extracellular | 46.9 | 50.0 |
| KRH54552 | Soybean | extracellular | 46.02 | 49.06 |
| KRH63343 | Soybean | extracellular | 46.02 | 49.06 |
| CDX91001 | Canola | extracellular | 46.02 | 49.06 |
| CDX85557 | Canola | extracellular | 46.02 | 49.06 |
| Bra023513.1-P | Field mustard | extracellular | 46.02 | 49.06 |
| AT5G15230.1 | Thale cress | extracellular | 45.13 | 48.11 |
| Zm00001d023290_P001 | Maize | extracellular | 47.79 | 41.86 |
| HORVU1Hr1G084230.1 | Barley | extracellular | 39.82 | 39.82 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 42.48 | 39.67 |
| CDX78620 | Canola | cytosol | 40.71 | 32.86 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 46.02 | 21.58 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G065670.1 | EnsemblPlantsGene:HORVU5Hr1G065670 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF23 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002953C65 | UniProt:M0WDN7 | MapMan:11.10.2.1.1 |
Description
No Description!
Coordinates
chrchr5H:+:502274067..502275107
Molecular Weight (calculated)
12634.4 Da
IEP (calculated)
8.545
GRAVY (calculated)
-0.177
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAGRLLVL VLIAVALLAV SIAEHKVSAS GTEEHEDNVY RVSKGGQGSL KIYQCKPVCE YRCSDTKYRK PCLFFCNKCC NTCLCVPSGF YGHKYECPCY
101: NNWKTKEGRP KCP
101: NNWKTKEGRP KCP
001: MMKLIVVFVI SSLLFATQFS NGDELESQAQ APAIHKNGGE GSLKPEECPK ACEYRCSATS HRKPCLFFCN KCCNKCLCVP SGTYGHKEEC PCYNNWTTKE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA12Gibberellin-regulated protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q6GKX7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.