Factsheet for Solyc03g116060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc04g082160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT5G15230.1	Solyc04g082160.2.1	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050285	Potato	extracellular	99.04	99.04
VIT_17s0000g06210.t01	Wine grape	extracellular	79.81	79.81
Solyc06g069790.2.1	Tomato	extracellular	77.88	77.88
KRH54552	Soybean	extracellular	72.12	70.75
KRH63343	Soybean	extracellular	70.19	68.87
GSMUA_Achr6P02710_001	Banana	extracellular	65.38	62.39
GSMUA_Achr7P18070_001	Banana	extracellular	64.42	61.47
AT1G74670.1	Thale cress	extracellular	58.65	60.4
Bra008162.1-P	Field mustard	extracellular	57.69	59.41
TraesCS7D01G210500.1	Wheat	extracellular	52.88	58.51
CDY71845	Canola	extracellular	56.73	58.42
Os09t0414900-01	Rice	extracellular	62.5	58.04
OQU89489	Sorghum	extracellular	62.5	56.52
Solyc11g011210.1.1	Tomato	extracellular	51.92	56.25
AT5G15230.1	Thale cress	extracellular	56.73	55.66
CDX70601	Canola	extracellular	56.73	55.66
Bra023513.1-P	Field mustard	extracellular	55.77	54.72
CDX91001	Canola	extracellular	55.77	54.72
CDX85557	Canola	extracellular	55.77	54.72
TraesCS7B01G115300.1	Wheat	extracellular	51.92	54.55
TraesCS7A01G208100.1	Wheat	extracellular	51.92	53.47
HORVU5Hr1G065670.1	Barley	extracellular	56.73	52.21
Solyc04g017720.2.1	Tomato	extracellular	56.73	51.75
TraesCS5D01G234400.1	Wheat	extracellular	54.81	51.35
Solyc06g007920.1.1	Tomato	cytosol	40.38	50.0
TraesCS5B01G225600.1	Wheat	extracellular	53.85	50.0
TraesCS5A01G227000.1	Wheat	extracellular	53.85	50.0
EER89583	Sorghum	extracellular	53.85	49.12
Solyc02g089350.2.1	Tomato	nucleus	52.88	49.11
Os06t0266800-02	Rice	extracellular	51.92	49.09
Solyc06g007910.2.1	Tomato	extracellular, nucleus	43.27	47.87
Solyc04g078200.2.1	Tomato	extracellular	29.81	47.69
Zm00001d023290_P001	Maize	extracellular	55.77	44.96
EES16564	Sorghum	extracellular	53.85	44.09
Solyc06g007890.2.1	Tomato	extracellular	37.5	41.49
Solyc12g042500.1.1	Tomato	extracellular	33.65	39.77
CDX78620	Canola	cytosol	51.92	38.57
OQU77894	Sorghum	extracellular	50.0	37.96
Solyc12g042520.1.1	Tomato	extracellular	31.73	37.5
Solyc01g107370.2.1	Tomato	extracellular	31.73	37.08
Solyc08g005620.2.1	Tomato	extracellular	30.77	35.96
Zm00001d038056_P001	Maize	extracellular	49.04	35.17
Os05t0376800-01	Rice	extracellular	49.04	33.55
HORVU7Hr1G042390.2	Barley	cytosol	50.96	21.99

Protein Annotations

EnsemblPlants:Solyc03g116060.2.1	EnsemblPlantsGene:Solyc03g116060.2	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF22	PFAM:PF02704
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002768D2C	UniProt:K4BLA8	MapMan:11.10.2.1.1	:

Description

Gibberellin-regulated protein 4 [Source:Projected from Arabidopsis thaliana (AT5G15230) UniProtKB/Swiss-Prot;Acc:P46690]

Coordinates

chr3:-:65570732..65572267

Molecular Weight (calculated)

11537.3 Da

IEP (calculated)

9.100

GRAVY (calculated)

-0.109

Length

104 amino acids

Sequence
(BLAST)

001: MAKLVSFFLL ALIAISMVAT TALAADAQYH LDRSRYGPGS LKPTQCLPQC TRRCSKTQYH KPCMFFCQKC CKTCLCVPPG FYGNKGVCPC YNNWKTKEGG
101: PKCP

Best Arabidopsis Sequence Match ( AT1G74670.1 )
(BLAST)

001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P

Arabidopsis Description

GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.