Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003089 | Potato | extracellular | 100.0 | 100.0 |
| Solyc06g007920.1.1 | Tomato | cytosol | 58.51 | 65.48 |
| Solyc06g007890.2.1 | Tomato | extracellular | 62.77 | 62.77 |
| CDY14668 | Canola | cytosol | 42.55 | 54.05 |
| GSMUA_Achr11P... | Banana | cytosol | 41.49 | 53.42 |
| VIT_00s0189g00060.t01 | Wine grape | cytosol, extracellular, nucleus | 34.04 | 50.0 |
| TraesCS1A01G381700.1 | Wheat | cytosol | 41.49 | 50.0 |
| Os10t0115550-00 | Rice | endoplasmic reticulum, extracellular | 37.23 | 49.3 |
| Solyc12g042500.1.1 | Tomato | extracellular | 44.68 | 47.73 |
| Solyc04g078200.2.1 | Tomato | extracellular | 32.98 | 47.69 |
| VIT_00s0189g00070.t01 | Wine grape | endoplasmic reticulum, extracellular | 42.55 | 45.98 |
| Solyc03g116060.2.1 | Tomato | extracellular | 47.87 | 43.27 |
| Solyc12g042520.1.1 | Tomato | extracellular | 40.43 | 43.18 |
| TraesCS1D01G389400.1 | Wheat | extracellular | 46.81 | 42.72 |
| TraesCS1A01G381600.1 | Wheat | extracellular | 46.81 | 42.72 |
| KRH18123 | Soybean | extracellular | 41.49 | 41.94 |
| KRH18120 | Soybean | extracellular | 41.49 | 41.94 |
| TraesCS1B01G404100.1 | Wheat | extracellular | 45.74 | 41.75 |
| Solyc11g011210.1.1 | Tomato | extracellular | 42.55 | 41.67 |
| Solyc01g107370.2.1 | Tomato | extracellular | 39.36 | 41.57 |
| CDY18069 | Canola | extracellular | 45.74 | 41.35 |
| Solyc06g069790.2.1 | Tomato | extracellular | 45.74 | 41.35 |
| CDY46336 | Canola | extracellular | 45.74 | 41.35 |
| KRG97330 | Soybean | extracellular | 40.43 | 41.3 |
| Zm00001d030236_P001 | Maize | extracellular | 44.68 | 40.0 |
| KXG38749 | Sorghum | extracellular | 44.68 | 40.0 |
| CDY27104 | Canola | extracellular | 44.68 | 40.0 |
| Solyc08g005620.2.1 | Tomato | extracellular | 37.23 | 39.33 |
| AT2G30810.1 | Thale cress | extracellular | 43.62 | 38.68 |
| Solyc04g017720.2.1 | Tomato | extracellular | 43.62 | 35.96 |
| Solyc02g089350.2.1 | Tomato | nucleus | 42.55 | 35.71 |
| HORVU1Hr1G084230.1 | Barley | extracellular | 42.55 | 35.4 |
Protein Annotations
| EnsemblPlants:Solyc06g007910.2.1 | EnsemblPlantsGene:Solyc06g007910.2 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF40 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002766335 | UniProt:K4C3H1 | MapMan:11.10.2.1.1 | : |
Description
No Description!
Coordinates
chr6:+:1795940..1797216
Molecular Weight (calculated)
10322.0 Da
IEP (calculated)
9.192
GRAVY (calculated)
0.127
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MKIILIFLVL LITVSVISAK PLIGSTTCPV PRSKCGQACI KRCSHKGHKK RCLFYCNHCC GWCQCVPPGY VGQNKGCCSC YNNWKTQIGG PKCP
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.