Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0189g00070.t01 | Wine grape | endoplasmic reticulum, extracellular | 84.38 | 62.07 |
| CDY14668 | Canola | cytosol | 68.75 | 59.46 |
| GSMUA_Achr11P... | Banana | cytosol | 67.19 | 58.9 |
| Os10t0115550-00 | Rice | endoplasmic reticulum, extracellular | 64.06 | 57.75 |
| KRG97330 | Soybean | extracellular | 68.75 | 47.83 |
| TraesCS1A01G381700.1 | Wheat | cytosol | 57.81 | 47.44 |
| KRH18120 | Soybean | extracellular | 67.19 | 46.24 |
| KRH18123 | Soybean | extracellular | 67.19 | 46.24 |
| AT2G30810.1 | Thale cress | extracellular | 70.31 | 42.45 |
| Solyc06g007920.1.1 | Tomato | cytosol | 54.69 | 41.67 |
| CDY46336 | Canola | extracellular | 67.19 | 41.35 |
| KXG38749 | Sorghum | extracellular | 67.19 | 40.95 |
| CDY18069 | Canola | extracellular | 65.62 | 40.38 |
| Zm00001d030236_P001 | Maize | extracellular | 65.62 | 40.0 |
| CDY27104 | Canola | extracellular | 65.62 | 40.0 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 62.5 | 38.46 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 62.5 | 37.74 |
| TraesCS1A01G381600.1 | Wheat | extracellular | 59.38 | 36.89 |
| TraesCS1D01G389400.1 | Wheat | extracellular | 59.38 | 36.89 |
| VIT_18s0001g09460.t01 | Wine grape | extracellular | 50.0 | 36.36 |
| TraesCS1B01G404100.1 | Wheat | extracellular | 56.25 | 34.95 |
| VIT_08s0007g05860.t01 | Wine grape | extracellular | 60.94 | 34.21 |
| VIT_03s0091g00390.t01 | Wine grape | extracellular | 46.88 | 34.09 |
| Solyc06g007910.2.1 | Tomato | extracellular, nucleus | 50.0 | 34.04 |
| PGSC0003DMT400003089 | Potato | extracellular | 50.0 | 34.04 |
| HORVU1Hr1G084230.1 | Barley | extracellular | 59.38 | 33.63 |
| PGSC0003DMT400003086 | Potato | extracellular | 45.31 | 30.85 |
| Solyc06g007890.2.1 | Tomato | extracellular | 43.75 | 29.79 |
| VIT_07s0129g00580.t01 | Wine grape | extracellular | 45.31 | 22.83 |
Protein Annotations
| ArrayExpress:VIT_00s0189g00060 | EMBL:FN595521 | EnsemblPlants:VIT_00s0189g00060.t01 | EnsemblPlantsGene:VIT_00s0189g00060 | InterPro:GASA | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF1 | PFAM:PF02704 | ProteinID:CBI25689 | ProteinID:CBI25689.3 | UniParc:UPI0001BE2C45 | UniProt:D7T5A6 |
| MapMan:11.10.2.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:9775242..9775609
Molecular Weight (calculated)
7424.0 Da
IEP (calculated)
8.195
GRAVY (calculated)
-0.492
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MTYIYFLVSC KYRCSDTQYR NACLEFCNLC CKKCLCVPSG TYGHKEECPC YNNWKTKEGG PKCP
001: MMKLIVVFVI SSLLFATQFS NGDELESQAQ APAIHKNGGE GSLKPEECPK ACEYRCSATS HRKPCLFFCN KCCNKCLCVP SGTYGHKEEC PCYNNWTTKE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA12Gibberellin-regulated protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q6GKX7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.