Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14668 | Canola | cytosol | 57.14 | 64.86 |
| GSMUA_Achr11P... | Banana | cytosol | 51.19 | 58.9 |
| Solyc06g007910.2.1 | Tomato | extracellular, nucleus | 65.48 | 58.51 |
| VIT_00s0189g00060.t01 | Wine grape | cytosol, extracellular, nucleus | 41.67 | 54.69 |
| Solyc06g007890.2.1 | Tomato | extracellular | 60.71 | 54.26 |
| TraesCS1A01G381700.1 | Wheat | cytosol | 48.81 | 52.56 |
| Os10t0115550-00 | Rice | endoplasmic reticulum, extracellular | 44.05 | 52.11 |
| VIT_00s0189g00070.t01 | Wine grape | endoplasmic reticulum, extracellular | 48.81 | 47.13 |
| KRH18120 | Soybean | extracellular | 50.0 | 45.16 |
| KRH18123 | Soybean | extracellular | 50.0 | 45.16 |
| Solyc04g078200.2.1 | Tomato | extracellular | 34.52 | 44.62 |
| AT2G30810.1 | Thale cress | extracellular | 54.76 | 43.4 |
| CDY27104 | Canola | extracellular | 53.57 | 42.86 |
| KRG97330 | Soybean | extracellular | 46.43 | 42.39 |
| KXG38749 | Sorghum | extracellular | 52.38 | 41.9 |
| TraesCS1A01G381600.1 | Wheat | extracellular | 51.19 | 41.75 |
| TraesCS1D01G389400.1 | Wheat | extracellular | 51.19 | 41.75 |
| Solyc11g011210.1.1 | Tomato | extracellular | 47.62 | 41.67 |
| CDY46336 | Canola | extracellular | 51.19 | 41.35 |
| Zm00001d030236_P001 | Maize | extracellular | 51.19 | 40.95 |
| Solyc06g069790.2.1 | Tomato | extracellular | 50.0 | 40.38 |
| Solyc03g116060.2.1 | Tomato | extracellular | 50.0 | 40.38 |
| CDY18069 | Canola | extracellular | 50.0 | 40.38 |
| TraesCS1B01G404100.1 | Wheat | extracellular | 48.81 | 39.81 |
| Solyc12g042500.1.1 | Tomato | extracellular | 40.48 | 38.64 |
| Solyc02g089350.2.1 | Tomato | nucleus | 51.19 | 38.39 |
| Solyc12g042520.1.1 | Tomato | extracellular | 39.29 | 37.5 |
| HORVU1Hr1G084230.1 | Barley | extracellular | 50.0 | 37.17 |
| Solyc04g017720.2.1 | Tomato | extracellular | 50.0 | 36.84 |
| Solyc08g005620.2.1 | Tomato | extracellular | 36.9 | 34.83 |
| Solyc01g107370.2.1 | Tomato | extracellular | 34.52 | 32.58 |
Protein Annotations
| EnsemblPlants:Solyc06g007920.1.1 | EnsemblPlantsGene:Solyc06g007920.1 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF40 | PFAM:PF02704 |
| UniParc:UPI0002766336 | UniProt:K4C3H2 | MapMan:11.10.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chr6:+:1799096..1799700
Molecular Weight (calculated)
9062.8 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.693
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNAQIINVD KPPTGPSTCP VPADKCGDAC NQRCSATSHK KPCLFYCNKC CEWCQCVPPG TSGGKECCDC YNNWKTKRGG PKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.