CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	72.97	73.97
VIT_00s0189g00060.t01	Wine grape	cytosol, extracellular, nucleus	59.46	68.75
TraesCS1A01G381700.1	Wheat	cytosol	63.51	60.26
CDY27104	Canola	extracellular	83.78	59.05
Os10t0115550-00	Rice	endoplasmic reticulum, extracellular	55.41	57.75
AT2G30810.1	Thale cress	extracellular	82.43	57.55
Solyc06g007920.1.1	Tomato	cytosol	64.86	57.14
KRG97330	Soybean	extracellular	70.27	56.52
KRH18123	Soybean	extracellular	70.27	55.91
KRH18120	Soybean	extracellular	70.27	55.91
VIT_00s0189g00070.t01	Wine grape	endoplasmic reticulum, extracellular	64.86	55.17
CDY46336	Canola	extracellular	71.62	50.96
CDY18069	Canola	extracellular	70.27	50.0
KXG38749	Sorghum	extracellular	70.27	49.52
Zm00001d030236_P001	Maize	extracellular	70.27	49.52
TraesCS1A01G381600.1	Wheat	extracellular	64.86	46.6
TraesCS1D01G389400.1	Wheat	extracellular	64.86	46.6
CDY71845	Canola	extracellular	62.16	45.54
TraesCS1B01G404100.1	Wheat	extracellular	62.16	44.66
CDY20958	Canola	extracellular	52.7	44.32
CDY20617	Canola	extracellular	52.7	44.32
CDX71072	Canola	extracellular	52.7	42.86
PGSC0003DMT400003089	Potato	extracellular	54.05	42.55
Solyc06g007910.2.1	Tomato	extracellular, nucleus	54.05	42.55
CDX70601	Canola	extracellular	60.81	42.45
CDX85557	Canola	extracellular	60.81	42.45
CDX91001	Canola	extracellular	60.81	42.45
CDY72009	Canola	extracellular	50.0	42.05
CDX88727	Canola	extracellular	51.35	41.76
PGSC0003DMT400003086	Potato	extracellular	52.7	41.49
CDY41324	Canola	cytosol	62.16	41.44
CDX80223	Canola	extracellular	51.35	41.3
CDY31591	Canola	extracellular	51.35	41.3
CDY31590	Canola	extracellular	51.35	41.3
CDY09248	Canola	extracellular	48.65	40.45
Solyc06g007890.2.1	Tomato	extracellular	51.35	40.43
CDY00909	Canola	extracellular	63.51	39.5
CDX80222	Canola	extracellular	48.65	39.13
HORVU1Hr1G084230.1	Barley	extracellular	59.46	38.94
CDY60168	Canola	extracellular	62.16	38.33
CDX93402	Canola	endoplasmic reticulum, extracellular	48.65	38.3
CDY22221	Canola	extracellular	63.51	36.72
CDX78620	Canola	cytosol	60.81	32.14
CDY50148	Canola	extracellular	39.19	30.21
CDX89647	Canola	extracellular	43.24	30.19
CDX93153	Canola	extracellular	43.24	30.19
CDY22975	Canola	extracellular	39.19	29.9
CDY52417	Canola	extracellular	40.54	27.78
CDY54472	Canola	extracellular	40.54	27.52

Protein Annotations

EnsemblPlants:CDY14668	EnsemblPlantsGene:GSBRNA2T00084449001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF1	PFAM:PF02704
ProteinID:CDY14668	ProteinID:CDY14668.1	SEG:seg	UniParc:UPI0004EE139A	UniProt:A0A078FQS6	MapMan:11.10.2.1.1

Description

BnaC05g19250DBnaC05g19250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQS6]

Coordinates

chrLK032046:-:68178..69204

Molecular Weight (calculated)

8158.9 Da

IEP (calculated)

7.991

GRAVY (calculated)

-0.609

Length

74 amino acids

Sequence
(BLAST)

1: MDNVGPPLGS LKPEECPKAC DFRCSATSHQ KPCLFFCNLC CKKCLCVPSG TYGHKEECPC YNNWKNKDGG PKCP

Best Arabidopsis Sequence Match ( AT2G30810.1 )
(BLAST)

001: MMKLIVVFVI SSLLFATQFS NGDELESQAQ APAIHKNGGE GSLKPEECPK ACEYRCSATS HRKPCLFFCN KCCNKCLCVP SGTYGHKEEC PCYNNWTTKE
101: GGPKCP

Arabidopsis Description

GASA12Gibberellin-regulated protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q6GKX7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.