CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00909	Canola	extracellular	94.17	94.96
CDY41324	Canola	cytosol	76.67	82.88
AT3G10185.1	Thale cress	endoplasmic reticulum, extracellular	81.67	80.33
CDY22221	Canola	extracellular	85.0	79.69
CDY14668	Canola	cytosol	38.33	62.16
PGSC0003DMT400019726	Potato	extracellular	57.5	60.53
Solyc04g017720.2.1	Tomato	extracellular	56.67	59.65
VIT_08s0007g05860.t01	Wine grape	extracellular	55.83	58.77
KRH66831	Soybean	extracellular	62.5	54.35
KRG95149	Soybean	extracellular	61.67	54.01
CDY71845	Canola	extracellular	44.17	52.48
CDX70601	Canola	extracellular	40.83	46.23
CDX91001	Canola	extracellular	40.83	46.23
CDX85557	Canola	extracellular	40.83	46.23
CDY20617	Canola	extracellular	33.33	45.45
CDY20958	Canola	extracellular	33.33	45.45
CDY27104	Canola	extracellular	39.17	44.76
CDY18069	Canola	extracellular	38.33	44.23
CDX80223	Canola	extracellular	33.33	43.48
CDY31590	Canola	extracellular	33.33	43.48
CDY31591	Canola	extracellular	33.33	43.48
CDY46336	Canola	extracellular	37.5	43.27
CDY72009	Canola	extracellular	31.67	43.18
CDY09248	Canola	extracellular	31.67	42.7
CDX80222	Canola	extracellular	32.5	42.39
CDX71072	Canola	extracellular	31.67	41.76
CDX88727	Canola	extracellular	31.67	41.76
CDX93402	Canola	endoplasmic reticulum, extracellular	30.0	38.3
CDX93153	Canola	extracellular	31.67	35.85
CDY50148	Canola	extracellular	28.33	35.42
CDX89647	Canola	extracellular	30.83	34.91
CDY54472	Canola	extracellular	30.83	33.95
CDY52417	Canola	extracellular	30.0	33.33
CDY22975	Canola	extracellular	26.67	32.99
CDX78620	Canola	cytosol	38.33	32.86

Protein Annotations

EnsemblPlants:CDY60168	EnsemblPlantsGene:GSBRNA2T00028260001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF8	PFAM:PF02704
ProteinID:CDY60168	ProteinID:CDY60168.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE1453
UniProt:A0A078J944	MapMan:11.10.2.1.1	:	:	:	:

Description

BnaAnng16620DBnaAnng16620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J944]

Coordinates

chrLK033849:+:41269..41922

Molecular Weight (calculated)

13336.3 Da

IEP (calculated)

8.971

GRAVY (calculated)

-0.515

Length

120 amino acids

Sequence
(BLAST)

001: MATKLNLIVF SIVMLHLLMS VQMHPIHSNK SPAPQPHPPQ SQPHHNSSQN GTTEGSLQLR ECGPRCGHRC SNTKYKEPCL FFCNKCCTKC LCVPPGTYGN
101: KQVCPCYNNW KTKLGGPKCP

Best Arabidopsis Sequence Match ( AT3G10185.1 )
(BLAST)

001: MATKLSIIVF SIVVLHLLLS AHMHPIYLES PARQPQPPQS QPQLPHHNNS QYGTTQGSLQ PQECGPRCGD RCSNTQYKKP CLFFCNKCCN KCLCVPPGTY
101: GNKQVCPCYN NWKTKSGGPK CP

Arabidopsis Description

Gibberellin-regulated family protein [Source:TAIR;Acc:AT3G10185]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.