Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g017720.2.1 | Tomato | extracellular | 97.37 | 97.37 |
| VIT_08s0007g05860.t01 | Wine grape | extracellular | 71.05 | 71.05 |
| AT3G10185.1 | Thale cress | endoplasmic reticulum, extracellular | 65.79 | 61.48 |
| CDY41324 | Canola | cytosol | 59.65 | 61.26 |
| PGSC0003DMT400083077 | Potato | extracellular | 55.26 | 61.16 |
| PGSC0003DMT400040585 | Potato | extracellular | 50.88 | 60.42 |
| CDY00909 | Canola | extracellular | 62.28 | 59.66 |
| KRG95149 | Soybean | extracellular | 69.3 | 57.66 |
| CDY60168 | Canola | extracellular | 60.53 | 57.5 |
| PGSC0003DMT400050285 | Potato | extracellular | 51.75 | 56.73 |
| KRH66831 | Soybean | extracellular | 68.42 | 56.52 |
| CDY22221 | Canola | extracellular | 61.4 | 54.69 |
| PGSC0003DMT400037423 | Potato | extracellular | 34.21 | 44.32 |
| PGSC0003DMT400003089 | Potato | extracellular | 35.09 | 42.55 |
| PGSC0003DMT400055426 | Potato | extracellular | 32.46 | 42.05 |
| PGSC0003DMT400066182 | Potato | extracellular | 32.46 | 41.57 |
| PGSC0003DMT400003086 | Potato | extracellular | 31.58 | 38.3 |
| PGSC0003DMT400047535 | Potato | extracellular | 29.82 | 38.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400019726 | EnsemblPlantsGene:PGSC0003DMG400007621 | EntrezGene:102603432 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF8 |
| PFAM:PF02704 | PGSC:PGSC0003DMG400007621 | RefSeq:XP_006358036.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000294B536 | UniProt:M1ACH2 | MapMan:11.10.2.1.1 | : | : | : |
Description
GAST1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007621]
Coordinates
chr4:+:11391067..11392231
Molecular Weight (calculated)
12645.9 Da
IEP (calculated)
8.958
GRAVY (calculated)
-0.147
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKLSLVLL LPLLIMLLLV GTHATIIIES PAPQPQPPNT LPMNGTTPGS LHPQDCLPKC TYRCSNTQYR KPCMFFCQKC CAKCLCVPAG TYGNKQFCPC
101: YNNWKTKRGG PKCP
101: YNNWKTKRGG PKCP
001: MATKLSIIVF SIVVLHLLLS AHMHPIYLES PARQPQPPQS QPQLPHHNNS QYGTTQGSLQ PQECGPRCGD RCSNTQYKKP CLFFCNKCCN KCLCVPPGTY
101: GNKQVCPCYN NWKTKSGGPK CP
101: GNKQVCPCYN NWKTKSGGPK CP
Arabidopsis Description
Gibberellin-regulated family protein [Source:TAIR;Acc:AT3G10185]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.