Factsheet for PGSC0003DMT400066182

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, golgi, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107370.2.1	Tomato	extracellular	98.88	98.88
VIT_18s0001g09460.t01	Wine grape	extracellular	67.42	68.18
GSMUA_Achr6P07810_001	Banana	cytosol	33.71	63.83
PGSC0003DMT400047535	Potato	extracellular	62.92	62.92
PGSC0003DMT400055426	Potato	extracellular	61.8	62.5
KRH05612	Soybean	extracellular	61.8	62.5
KRH15429	Soybean	extracellular	60.67	61.36
KRH52061	Soybean	extracellular	60.67	61.36
PGSC0003DMT400037423	Potato	extracellular	59.55	60.23
GSMUA_Achr10P...	Banana	extracellular	58.43	57.14
GSMUA_Achr6P02260_001	Banana	extracellular	56.18	54.95
GSMUA_Achr6P11160_001	Banana	extracellular	55.06	53.85
GSMUA_Achr10P...	Banana	extracellular	55.06	53.26
Os03t0760800-01	Rice	extracellular	55.06	52.69
GSMUA_Achr5P16080_001	Banana	extracellular	46.07	52.56
TraesCS5D01G408000.1	Wheat	extracellular	55.06	52.13
TraesCS5A01G398500.1	Wheat	extracellular	55.06	52.13
TraesCS5B01G403500.1	Wheat	extracellular	53.93	51.06
TraesCS5A01G398600.1	Wheat	endoplasmic reticulum, extracellular	55.06	51.04
EER90847	Sorghum	extracellular	51.69	49.46
Zm00001d013222_P001	Maize	extracellular	51.69	47.92
TraesCS5B01G403600.1	Wheat	endoplasmic reticulum, extracellular	51.69	46.94
TraesCS5D01G408100.1	Wheat	endoplasmic reticulum, extracellular	51.69	46.94
TraesCS5A01G398700.1	Wheat	endoplasmic reticulum, extracellular	49.44	44.9
PGSC0003DMT400003089	Potato	extracellular	41.57	39.36
PGSC0003DMT400040585	Potato	extracellular	41.57	38.54
PGSC0003DMT400003086	Potato	extracellular	40.45	38.3
PGSC0003DMT400083077	Potato	extracellular	39.33	33.98
PGSC0003DMT400050285	Potato	extracellular	38.2	32.69
PGSC0003DMT400019726	Potato	extracellular	41.57	32.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400066182	EnsemblPlantsGene:PGSC0003DMG400025759	EntrezGene:102594765	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF10
PFAM:PF02704	PGSC:PGSC0003DMG400025759	RefSeq:XP_006346334.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002960B30	UniProt:M1CF55	MapMan:11.10.2.1.1	:	:	:

Description

GAST1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025759]

Coordinates

chr1:+:83836585..83837420

Molecular Weight (calculated)

9970.5 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.174

Length

89 amino acids

Sequence
(BLAST)

1: MKRFLVAFML LFALLLTSSF LQPATAKSVY CAQKCEARCS KAGLKDRCVK YCELCCAKCK CVPNGTYGNK HQCPCYRDMK NSKGKPKCP

Best Arabidopsis Sequence Match ( AT5G59845.1 )
(BLAST)

1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP

Arabidopsis Description

GASA10Gibberellin-regulated protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFM2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.