Factsheet for VIT_18s0001g09460.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07810_001	Banana	cytosol	39.77	74.47
KRH52061	Soybean	extracellular	71.59	71.59
KRH05612	Soybean	extracellular	70.45	70.45
KRH15429	Soybean	extracellular	70.45	70.45
VIT_03s0091g00390.t01	Wine grape	extracellular	68.18	68.18
PGSC0003DMT400066182	Potato	extracellular	68.18	67.42
Solyc01g107370.2.1	Tomato	extracellular	68.18	67.42
GSMUA_Achr10P...	Banana	extracellular	64.77	62.64
GSMUA_Achr10P...	Banana	extracellular	63.64	60.87
TraesCS5D01G408000.1	Wheat	extracellular	64.77	60.64
GSMUA_Achr6P11160_001	Banana	extracellular	62.5	60.44
TraesCS5B01G403500.1	Wheat	extracellular	63.64	59.57
TraesCS5A01G398600.1	Wheat	endoplasmic reticulum, extracellular	64.77	59.38
GSMUA_Achr6P02260_001	Banana	extracellular	61.36	59.34
GSMUA_Achr5P16080_001	Banana	extracellular	51.14	57.69
TraesCS5A01G398500.1	Wheat	extracellular	61.36	57.45
Os03t0760800-01	Rice	extracellular	59.09	55.91
TraesCS5D01G408100.1	Wheat	endoplasmic reticulum, extracellular	61.36	55.1
Zm00001d013222_P001	Maize	extracellular	59.09	54.17
TraesCS5B01G403600.1	Wheat	endoplasmic reticulum, extracellular	60.23	54.08
EER90847	Sorghum	extracellular	56.82	53.76
TraesCS5A01G398700.1	Wheat	endoplasmic reticulum, extracellular	59.09	53.06
VIT_00s0189g00060.t01	Wine grape	cytosol, extracellular, nucleus	36.36	50.0
VIT_07s0129g00580.t01	Wine grape	extracellular	70.45	48.82
VIT_00s0189g00070.t01	Wine grape	endoplasmic reticulum, extracellular	43.18	43.68
VIT_17s0000g06210.t01	Wine grape	extracellular	42.05	35.58
VIT_14s0108g00740.t01	Wine grape	extracellular	40.91	33.96
VIT_08s0007g05860.t01	Wine grape	extracellular	40.91	31.58

Protein Annotations

EntrezGene:100257455	wikigene:100257455	MapMan:11.10.2.1.1	ProteinID:CBI19434	ProteinID:CBI19434.3	UniProt:E0CP56
EMBL:FN595227	InterPro:GASA	EntrezGene:LOC100257455	wikigene:LOC100257455	PFAM:PF02704	PANTHER:PTHR23201
PANTHER:PTHR23201:SF10	SignalP:SignalP-noTM	TIGR:TC55621	TIGR:TC56092	TIGR:TC63285	TIGR:TC65923
UniParc:UPI0001985340	ArrayExpress:VIT_18s0001g09460	EnsemblPlantsGene:VIT_18s0001g09460	EnsemblPlants:VIT_18s0001g09460.t01	unigene:Vvi.8929	RefSeq:XP_002285141
RefSeq:XP_002285141.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:7914321..7915120

Molecular Weight (calculated)

9588.8 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.168

Length

88 amino acids

Sequence
(BLAST)

1: MKPLLATFLL VFLVLSSSFV QNAMAGSSFC DSKCAARCSK AGMKDRCLKY CGICCEECKC VPSGTYGNKH ECPCYKDKKN SKGQPKCP

Best Arabidopsis Sequence Match ( AT5G59845.1 )
(BLAST)

1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP

Arabidopsis Description

GASA10Gibberellin-regulated protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFM2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.