Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 | |
| VIT_09s0054g01880.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | VIT_09s0054g01880.t01 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93532 | Soybean | extracellular | 85.85 | 82.73 |
| KRH01173 | Soybean | extracellular | 79.25 | 78.5 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 76.42 | 77.88 |
| KRH40097 | Soybean | extracellular | 78.3 | 77.57 |
| AT5G15230.1 | Thale cress | extracellular | 65.09 | 65.09 |
| GSMUA_Achr6P02710_001 | Banana | extracellular | 66.04 | 64.22 |
| VIT_00s0189g00060.t01 | Wine grape | cytosol, extracellular, nucleus | 37.74 | 62.5 |
| AT1G74670.1 | Thale cress | extracellular | 59.43 | 62.38 |
| CDX70601 | Canola | extracellular | 62.26 | 62.26 |
| GSMUA_Achr7P18070_001 | Banana | extracellular | 63.21 | 61.47 |
| Bra023513.1-P | Field mustard | extracellular | 61.32 | 61.32 |
| CDX85557 | Canola | extracellular | 61.32 | 61.32 |
| CDX91001 | Canola | extracellular | 61.32 | 61.32 |
| OQU89489 | Sorghum | extracellular | 65.09 | 60.0 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 52.83 | 59.57 |
| Bra008162.1-P | Field mustard | extracellular | 55.66 | 58.42 |
| CDY71845 | Canola | extracellular | 54.72 | 57.43 |
| Os09t0414900-01 | Rice | extracellular | 60.38 | 57.14 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 52.83 | 56.57 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 52.83 | 55.45 |
| Os06t0266800-02 | Rice | extracellular | 54.72 | 52.73 |
| VIT_00s0189g00070.t01 | Wine grape | endoplasmic reticulum, extracellular | 42.45 | 51.72 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 54.72 | 51.33 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 52.83 | 50.0 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 51.89 | 49.55 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 51.89 | 49.11 |
| VIT_08s0007g05860.t01 | Wine grape | extracellular | 51.89 | 48.25 |
| EER89583 | Sorghum | extracellular | 50.0 | 46.49 |
| Zm00001d023290_P001 | Maize | extracellular | 53.77 | 44.19 |
| CDX78620 | Canola | cytosol | 56.6 | 42.86 |
| EES16564 | Sorghum | extracellular | 50.0 | 41.73 |
| VIT_18s0001g09460.t01 | Wine grape | extracellular | 33.96 | 40.91 |
| VIT_03s0091g00390.t01 | Wine grape | extracellular | 31.13 | 37.5 |
| OQU77894 | Sorghum | extracellular | 46.23 | 35.77 |
| Zm00001d038056_P001 | Maize | extracellular | 46.23 | 33.79 |
| Os05t0376800-01 | Rice | extracellular | 45.28 | 31.58 |
| VIT_07s0129g00580.t01 | Wine grape | extracellular | 31.13 | 25.98 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 48.11 | 21.16 |
Protein Annotations
| EntrezGene:100250853 | wikigene:100250853 | EntrezGene:100254384 | wikigene:100254384 | MapMan:11.10.2.1.1 | EMBL:AM425063 |
| ProteinID:CAN64498 | ProteinID:CAN64498.1 | ProteinID:CBI22214 | ProteinID:CBI22214.3 | UniProt:D7SXB7 | EMBL:FN595239 |
| InterPro:GASA | EntrezGene:LOC100250853 | wikigene:LOC100250853 | EntrezGene:LOC100254384 | wikigene:LOC100254384 | PFAM:PF02704 |
| PANTHER:PTHR23201 | PANTHER:PTHR23201:SF21 | SignalP:SignalP-noTM | TIGR:TC66111 | TMHMM:TMhelix | UniParc:UPI0001984C10 |
| ArrayExpress:VIT_14s0108g00740 | EnsemblPlantsGene:VIT_14s0108g00740 | EnsemblPlants:VIT_14s0108g00740.t01 | unigene:Vvi.12995 | RefSeq:XP_002264339 | RefSeq:XP_002264339.1 |
| RefSeq:XP_002283517 | RefSeq:XP_002283517.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr14:-:29446314..29447909
Molecular Weight (calculated)
11794.5 Da
IEP (calculated)
9.239
GRAVY (calculated)
-0.289
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKVFALFLL ALLAISMLHT TVLASHGHGG HHYDQKNYGP GSLKSFQCPS QCSRRCGKTQ YHKPCMFFCQ KCCKKCLCVP PGYYGNKAVC PCYNNWKTKE
101: GGPKCP
101: GGPKCP
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.