Factsheet for Os06t0266800-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19226311
extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19226311 doi

WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0498800-01
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	Os10t0114400-01	AT2G01950.1	19000166
AT5G15230.1	Os07t0498800-01	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G208100.1	Wheat	extracellular	75.45	82.18
TraesCS7B01G115300.1	Wheat	extracellular	72.73	80.81
TraesCS7D01G210500.1	Wheat	extracellular	67.27	78.72
EER89583	Sorghum	extracellular	74.55	71.93
PGSC0003DMT400083077	Potato	extracellular	55.45	59.22
Solyc06g069790.2.1	Tomato	extracellular	55.45	58.65
Os10t0115550-00	Rice	endoplasmic reticulum, extracellular	37.27	57.75
AT5G15230.1	Thale cress	extracellular	55.45	57.55
VIT_17s0000g06210.t01	Wine grape	extracellular	53.64	56.73
AT1G74670.1	Thale cress	extracellular	51.82	56.44
CDX70601	Canola	extracellular	53.64	55.66
CDX91001	Canola	extracellular	52.73	54.72
VIT_14s0108g00740.t01	Wine grape	extracellular	52.73	54.72
CDX85557	Canola	extracellular	52.73	54.72
Bra023513.1-P	Field mustard	extracellular	52.73	54.72
Bra008162.1-P	Field mustard	extracellular	49.09	53.47
Os09t0414900-01	Rice	extracellular	53.64	52.68
CDY71845	Canola	extracellular	48.18	52.48
KRH01173	Soybean	extracellular	50.91	52.34
PGSC0003DMT400050285	Potato	extracellular	49.09	51.92
Solyc03g116060.2.1	Tomato	extracellular	49.09	51.92
KRG93532	Soybean	extracellular	51.82	51.82
KRH40097	Soybean	extracellular	50.0	51.4
KRH63343	Soybean	extracellular	49.09	50.94
KRH54552	Soybean	extracellular	46.36	48.11
Zm00001d023290_P001	Maize	extracellular	54.55	46.51
GSMUA_Achr8P22060_001	Banana	extracellular	50.91	46.28
Os03t0760800-01	Rice	extracellular	34.55	40.86
CDX78620	Canola	cytosol	44.55	35.0
Os05t0376800-01	Rice	extracellular	48.18	34.87
HORVU7Hr1G042390.2	Barley	cytosol	68.18	31.12

Protein Annotations

MapMan:11.10.2.1.1	EntrezGene:4340712	ProteinID:AAT42201.1	ProteinID:BAD53514.1	ProteinID:BAD54389.1	ProteinID:BAF19260.1
ProteinID:BAS97155.1	ProteinID:BAS97156.1	InterPro:GASA	GO:GO:0005575	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009506	GO:GO:0009628	GO:GO:0009719	GO:GO:0009751	GO:GO:0010286
EnsemblPlantsGene:Os06g0266800	EnsemblPlants:Os06t0266800-02	PFAM:PF02704	PANTHER:PTHR23201	PANTHER:PTHR23201:SF22	UniProt:Q53AN3
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000050B7A1	RefSeq:XP_015641724.1	SEG:seg	:

Description

GA-stimulated transcript (GAST) family gene in rice 1Similar to Gibberellin-stimulated protein. (Os06t0266800-01);GAST gene family protein, Coordinator in crosstalk between GA nad BR signaling (Os06t0266800-02)

Coordinates

chr6:-:8848154..8848833

Molecular Weight (calculated)

11308.9 Da

IEP (calculated)

9.131

GRAVY (calculated)

-0.053

Length

110 amino acids

Sequence
(BLAST)

001: MASSTKIPFL LLAVLLLLSI AFPSEVMAGG RGRGGGGGGG VAGGGNLRPW ECSPKCAGRC SNTQYKKACL TFCNKCCAKC LCVPPGTYGN KGACPCYNNW
101: KTKEGGPKCP

Best Arabidopsis Sequence Match ( AT1G74670.1 )
(BLAST)

001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P

Arabidopsis Description

GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.