Factsheet for HORVU7Hr1G042390.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1
HORVU6Hr1G002580.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166
AT5G15230.1	HORVU6Hr1G002580.6	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G208100.1	Wheat	extracellular	33.2	79.21
TraesCS7D01G210500.1	Wheat	extracellular	30.71	78.72
TraesCS7B01G115300.1	Wheat	extracellular	31.95	77.78
Os06t0266800-02	Rice	extracellular	31.12	68.18
EER89583	Sorghum	extracellular	31.95	67.54
VIT_17s0000g06210.t01	Wine grape	extracellular	22.41	51.92
PGSC0003DMT400083077	Potato	extracellular	21.99	51.46
Solyc03g116060.2.1	Tomato	extracellular	21.99	50.96
KRH40097	Soybean	extracellular	22.41	50.47
Solyc06g069790.2.1	Tomato	extracellular	21.58	50.0
PGSC0003DMT400050285	Potato	extracellular	21.58	50.0
KRG93532	Soybean	extracellular	22.82	50.0
KRH01173	Soybean	extracellular	21.99	49.53
VIT_14s0108g00740.t01	Wine grape	extracellular	21.16	48.11
CDY71845	Canola	extracellular	19.5	46.53
Bra008162.1-P	Field mustard	extracellular	19.5	46.53
AT5G15230.1	Thale cress	extracellular	20.33	46.23
KRH63343	Soybean	extracellular	20.33	46.23
CDX70601	Canola	extracellular	20.33	46.23
HORVU5Hr1G065670.1	Barley	extracellular	21.58	46.02
AT1G74670.1	Thale cress	extracellular	19.09	45.54
GSMUA_Achr8P22060_001	Banana	extracellular	22.82	45.45
KRH54552	Soybean	extracellular	19.92	45.28
CDX91001	Canola	extracellular	19.92	45.28
CDX85557	Canola	extracellular	19.92	45.28
Bra023513.1-P	Field mustard	extracellular	19.92	45.28
Zm00001d023290_P001	Maize	extracellular	22.82	42.64
HORVU1Hr1G084230.1	Barley	extracellular	17.43	37.17
CDX78620	Canola	cytosol	18.67	32.14

Protein Annotations

EnsemblPlants:HORVU7Hr1G042390.2	EnsemblPlantsGene:HORVU7Hr1G042390	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF22	PFAM:PF02704
SEG:seg	UniParc:UPI000B464097	UniProt:A0A287W821	MapMan:11.10.2.1.1	:	:

Description

No Description!

Coordinates

chrchr7H:-:122599706..122600755

Molecular Weight (calculated)

26076.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.649

Length

241 amino acids

Sequence
(BLAST)

001: KRLPTEKEGR VAVHCRSVTH AWSEHPVEHH MPSPDSRHRP LHSNASITAR PLPPSTTHLP LTSCPAALLP ALHIPRTPGD PTKRFQVYNS HLSLLPRHAR
101: AEKRSSRRHG QDLLPPPGAP RPRSRVPRGN HPCHFTFILH PCIYVSLTHR CSSPLGRAVQ DVMGGGGGGG GGGGGGKLKP WECSSKCSSR CSGTQYKKAC
201: LTYCNKCCAT CLCVPPGTYG NKGACPCYNN WKTKEGGPKC P

Best Arabidopsis Sequence Match ( AT5G15230.2 )
(BLAST)

1: MASSGSNVKW SQKRYGPGSL KRTQCPSECD RRCKKTQYHK ACITFCNKCC RKCLCVPPGY YGNKQVCSCY NNWKTQEGGP KCP

Arabidopsis Description

GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.