Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G115300.1 | Wheat | extracellular | 95.74 | 90.91 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 94.68 | 88.12 |
| Os06t0266800-02 | Rice | extracellular | 78.72 | 67.27 |
| EER89583 | Sorghum | extracellular | 75.53 | 62.28 |
| PGSC0003DMT400083077 | Potato | extracellular | 60.64 | 55.34 |
| AT5G15230.1 | Thale cress | extracellular | 61.7 | 54.72 |
| Solyc06g069790.2.1 | Tomato | extracellular | 59.57 | 53.85 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 59.57 | 53.85 |
| KRH40097 | Soybean | extracellular | 60.64 | 53.27 |
| Solyc03g116060.2.1 | Tomato | extracellular | 58.51 | 52.88 |
| PGSC0003DMT400050285 | Potato | extracellular | 58.51 | 52.88 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 59.57 | 52.83 |
| AT1G74670.1 | Thale cress | extracellular | 56.38 | 52.48 |
| KRH01173 | Soybean | extracellular | 59.57 | 52.34 |
| Bra008162.1-P | Field mustard | extracellular | 55.32 | 51.49 |
| KRH63343 | Soybean | extracellular | 57.45 | 50.94 |
| CDX70601 | Canola | extracellular | 57.45 | 50.94 |
| CDY71845 | Canola | extracellular | 54.26 | 50.49 |
| CDX91001 | Canola | extracellular | 56.38 | 50.0 |
| CDX85557 | Canola | extracellular | 56.38 | 50.0 |
| Bra023513.1-P | Field mustard | extracellular | 56.38 | 50.0 |
| KRG93532 | Soybean | extracellular | 57.45 | 49.09 |
| KRH54552 | Soybean | extracellular | 55.32 | 49.06 |
| TraesCS1D01G389400.1 | Wheat | extracellular | 52.13 | 47.57 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 53.19 | 45.05 |
| Zm00001d023290_P001 | Maize | extracellular | 59.57 | 43.41 |
| TraesCS5D01G408100.1 | Wheat | endoplasmic reticulum, extracellular | 43.62 | 41.84 |
| TraesCS5D01G408000.1 | Wheat | extracellular | 41.49 | 41.49 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 53.19 | 41.32 |
| CDX78620 | Canola | cytosol | 50.0 | 33.57 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 78.72 | 30.71 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G210500.1 | EnsemblPlantsGene:TraesCS7D01G210500 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF22 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:11.10.2.1.1 | : | : |
Description
No Description!
Coordinates
chr7D:-:168494111..168495028
Molecular Weight (calculated)
9922.4 Da
IEP (calculated)
9.108
GRAVY (calculated)
0.034
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKISFLFVA LLVLAVAFPV KVMGGGGGGK LKPWECPSKC SSRCSGTQYK KACLTYCNKC CATCLCVPPG TYGNKGACPC YNNWKTKEGG PKCP
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.