CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06004
KRH17506
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15230.1	KRH42483	AT2G01950.1	19000166
AT5G15230.1	KRH58580	AT2G01950.1	19000166
AT5G15230.1	KRH06004	AT5G42220.1	21798944
AT5G15230.1	KRH17506	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00740.t01	Wine grape	extracellular	82.73	85.85
KRH01173	Soybean	extracellular	79.09	81.31
KRH40097	Soybean	extracellular	77.27	79.44
KRH54552	Soybean	extracellular	65.45	67.92
KRH63343	Soybean	extracellular	65.45	67.92
AT5G15230.1	Thale cress	extracellular	62.73	65.09
GSMUA_Achr6P02710_001	Banana	extracellular	63.64	64.22
CDX70601	Canola	extracellular	60.91	63.21
AT1G74670.1	Thale cress	extracellular	57.27	62.38
CDX91001	Canola	extracellular	60.0	62.26
Bra023513.1-P	Field mustard	extracellular	60.0	62.26
CDX85557	Canola	extracellular	60.0	62.26
GSMUA_Achr7P18070_001	Banana	extracellular	60.0	60.55
Bra008162.1-P	Field mustard	extracellular	55.45	60.4
OQU89489	Sorghum	extracellular	62.73	60.0
CDY71845	Canola	extracellular	54.55	59.41
Os09t0414900-01	Rice	extracellular	59.09	58.04
TraesCS7D01G210500.1	Wheat	extracellular	49.09	57.45
HORVU5Hr1G065670.1	Barley	extracellular	55.45	53.98
KRH17367	Soybean	endoplasmic reticulum, extracellular	47.27	53.61
TraesCS5A01G227000.1	Wheat	extracellular	54.55	53.57
TraesCS7B01G115300.1	Wheat	extracellular	48.18	53.54
TraesCS5D01G234400.1	Wheat	extracellular	53.64	53.15
TraesCS5B01G225600.1	Wheat	extracellular	53.64	52.68
KRH73005	Soybean	endoplasmic reticulum, extracellular	46.36	52.58
TraesCS7A01G208100.1	Wheat	extracellular	48.18	52.48
Os06t0266800-02	Rice	extracellular	51.82	51.82
KRH18120	Soybean	extracellular	41.82	49.46
KRH18123	Soybean	extracellular	41.82	49.46
KRG97330	Soybean	extracellular	40.91	48.91
EER89583	Sorghum	extracellular	49.09	47.37
Zm00001d023290_P001	Maize	extracellular	53.64	45.74
EES16564	Sorghum	extracellular	50.91	44.09
CDX78620	Canola	cytosol	55.45	43.57
KRH52061	Soybean	extracellular	33.64	42.05
KRH05612	Soybean	extracellular	33.64	42.05
KRH15429	Soybean	extracellular	32.73	40.91
KRG95149	Soybean	extracellular	50.91	40.88
KRH66831	Soybean	extracellular	50.0	39.86
OQU77894	Sorghum	extracellular	47.27	37.96
Zm00001d038056_P001	Maize	extracellular	46.36	35.17
KRH35705	Soybean	extracellular	28.18	34.44
Os05t0376800-01	Rice	extracellular	47.27	34.21
KRG91068	Soybean	extracellular	27.27	33.33
HORVU7Hr1G042390.2	Barley	cytosol	50.0	22.82

Protein Annotations

EMBL:ACUP02011587	EMBL:BT089082	EnsemblPlants:KRG93532	EnsemblPlantsGene:GLYMA_19G022500	EntrezGene:100305480	InterPro:GASA
PANTHER:PTHR23201	PANTHER:PTHR23201:SF21	PFAM:PF02704	ProteinID:KRG93532	ProteinID:KRG93532.1	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000004A1BB	UniProt:C6SV89	MapMan:11.10.2.1.1	:

Description

hypothetical protein

Coordinates

chr19:+:2574642..2577346

Molecular Weight (calculated)

12190.2 Da

IEP (calculated)

9.562

GRAVY (calculated)

-0.262

Length

110 amino acids

Sequence
(BLAST)

001: MAVANKLLSV LIIALIAISM LQTVVMASHG HGGHHYNDKK KYGPGSLKSF QCPSQCSRRC GKTQYHKPCM FFCQKCCRKC LCVPPGYYGN KAVCPCYNNW
101: KTKEGGPKCP

Best Arabidopsis Sequence Match ( AT5G15230.1 )
(BLAST)

001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP

Arabidopsis Description

GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.