Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KXG25466 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038056_P001 | Maize | extracellular | 81.02 | 76.55 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 53.28 | 60.33 |
| Os05t0376800-01 | Rice | extracellular | 64.96 | 58.55 |
| Bra008162.1-P | Field mustard | extracellular | 37.96 | 51.49 |
| CDY71845 | Canola | extracellular | 37.96 | 51.49 |
| AT1G74670.1 | Thale cress | extracellular | 37.96 | 51.49 |
| PGSC0003DMT400083077 | Potato | extracellular | 37.96 | 50.49 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 37.96 | 50.0 |
| Solyc06g069790.2.1 | Tomato | extracellular | 37.96 | 50.0 |
| Solyc03g116060.2.1 | Tomato | extracellular | 37.96 | 50.0 |
| PGSC0003DMT400050285 | Potato | extracellular | 37.23 | 49.04 |
| EER89583 | Sorghum | extracellular | 40.15 | 48.25 |
| OQU89489 | Sorghum | extracellular | 40.15 | 47.83 |
| KRG93532 | Soybean | extracellular | 37.96 | 47.27 |
| EES16564 | Sorghum | extracellular | 43.8 | 47.24 |
| KRH54552 | Soybean | extracellular | 36.5 | 47.17 |
| KRH63343 | Soybean | extracellular | 36.5 | 47.17 |
| KRH40097 | Soybean | extracellular | 36.5 | 46.73 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 35.77 | 46.23 |
| KRH01173 | Soybean | extracellular | 35.77 | 45.79 |
| KXG38749 | Sorghum | extracellular | 35.04 | 45.71 |
| CDX91001 | Canola | extracellular | 35.04 | 45.28 |
| CDX85557 | Canola | extracellular | 35.04 | 45.28 |
| CDX70601 | Canola | extracellular | 35.04 | 45.28 |
| Bra023513.1-P | Field mustard | extracellular | 35.04 | 45.28 |
| AT5G15230.1 | Thale cress | extracellular | 32.12 | 41.51 |
| EER90847 | Sorghum | extracellular | 27.74 | 40.86 |
| CDX78620 | Canola | cytosol | 30.66 | 30.0 |
Protein Annotations
| EnsemblPlants:OQU77894 | EnsemblPlantsGene:SORBI_3009G119800 | EntrezGene:8077934 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF8 |
| PFAM:PF02704 | ProteinID:OQU77894 | ProteinID:OQU77894.1 | RefSeq:XP_002441006.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0001A88A2C | UniProt:A0A1Z5R296 | MapMan:11.10.2.1.1 | : | : |
Description
hypothetical protein
Coordinates
chr9:-:47001582..47005538
Molecular Weight (calculated)
14453.7 Da
IEP (calculated)
9.319
GRAVY (calculated)
-0.160
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRKSPWSLL QLLCCAAMVV ALLLSQQGSQ AAYFVPSPGP APAPTNSSAA PPPPPPAKPN AFPLPMYGVT PGSLQPQECG GRCAARCSAT AYRKPCLFFC
101: RKCCATCLCV PAGTYGNKNT CPCYNNWKTK RGGPKCP
101: RKCCATCLCV PAGTYGNKNT CPCYNNWKTK RGGPKCP
001: MATKLSIIVF SIVVLHLLLS AHMHPIYLES PARQPQPPQS QPQLPHHNNS QYGTTQGSLQ PQECGPRCGD RCSNTQYKKP CLFFCNKCCN KCLCVPPGTY
101: GNKQVCPCYN NWKTKSGGPK CP
101: GNKQVCPCYN NWKTKSGGPK CP
Arabidopsis Description
Gibberellin-regulated family protein [Source:TAIR;Acc:AT3G10185]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.