Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 | |
| Zm00001d052721_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | Zm00001d052721_P001 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77894 | Sorghum | extracellular | 76.55 | 81.02 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 49.66 | 59.5 |
| Os05t0376800-01 | Rice | extracellular | 62.07 | 59.21 |
| AT1G74670.1 | Thale cress | extracellular | 36.55 | 52.48 |
| Bra008162.1-P | Field mustard | extracellular | 35.86 | 51.49 |
| CDY71845 | Canola | extracellular | 35.86 | 51.49 |
| PGSC0003DMT400083077 | Potato | extracellular | 35.86 | 50.49 |
| Solyc06g069790.2.1 | Tomato | extracellular | 35.86 | 50.0 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 35.86 | 50.0 |
| Solyc03g116060.2.1 | Tomato | extracellular | 35.17 | 49.04 |
| PGSC0003DMT400050285 | Potato | extracellular | 34.48 | 48.08 |
| KRH54552 | Soybean | extracellular | 34.48 | 47.17 |
| KRH63343 | Soybean | extracellular | 34.48 | 47.17 |
| KRG93532 | Soybean | extracellular | 35.17 | 46.36 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 33.79 | 46.23 |
| KRH40097 | Soybean | extracellular | 33.79 | 45.79 |
| KRH01173 | Soybean | extracellular | 33.79 | 45.79 |
| CDX91001 | Canola | extracellular | 33.1 | 45.28 |
| CDX85557 | Canola | extracellular | 33.1 | 45.28 |
| CDX70601 | Canola | extracellular | 33.1 | 45.28 |
| Bra023513.1-P | Field mustard | extracellular | 33.1 | 45.28 |
| Zm00001d030236_P001 | Maize | extracellular | 32.41 | 44.76 |
| Zm00001d023290_P001 | Maize | extracellular | 39.31 | 44.19 |
| AT5G15230.1 | Thale cress | extracellular | 30.34 | 41.51 |
| Zm00001d013222_P001 | Maize | extracellular | 26.21 | 39.58 |
| CDX78620 | Canola | cytosol | 30.34 | 31.43 |
Protein Annotations
| EnsemblPlants:Zm00001d038056_P001 | EnsemblPlants:Zm00001d038056_T001 | EnsemblPlantsGene:Zm00001d038056 | EntrezGene:103630300 | InterPro:GASA | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF8 | PFAM:PF02704 | ProteinID:AQK85532.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000004A1A3 | UniProt:A0A1D6M2X4 | MapMan:11.10.2.1.1 | : | : | : |
Description
gpm109aGibberellin-regulated protein 13
Coordinates
chr6:-:146555470..146556601
Molecular Weight (calculated)
14980.2 Da
IEP (calculated)
8.815
GRAVY (calculated)
-0.191
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKSPWSLR LLICCAAMVA IALLPQQGGQ AACFVPTPGP APAPPGSSAT NTNASSAAPR PAKPSAFPPP MYGGVTPGTG SLQPHECGGR CAERCSATAY
101: QKPCLFFCRK CCAACLCVPP GTYGNKNTCP CYNNWKTKRG GPKCP
101: QKPCLFFCRK CCAACLCVPP GTYGNKNTCP CYNNWKTKRG GPKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.