Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 | |
| VIT_09s0054g01880.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | VIT_09s0054g01880.t01 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116060.2.1 | Tomato | extracellular | 79.81 | 79.81 |
| PGSC0003DMT400050285 | Potato | extracellular | 78.85 | 78.85 |
| PGSC0003DMT400083077 | Potato | extracellular | 76.92 | 77.67 |
| Solyc06g069790.2.1 | Tomato | extracellular | 76.92 | 76.92 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 77.88 | 76.42 |
| KRH54552 | Soybean | extracellular | 76.92 | 75.47 |
| KRH63343 | Soybean | extracellular | 75.0 | 73.58 |
| GSMUA_Achr6P02710_001 | Banana | extracellular | 71.15 | 67.89 |
| AT1G74670.1 | Thale cress | extracellular | 63.46 | 65.35 |
| GSMUA_Achr7P18070_001 | Banana | extracellular | 68.27 | 65.14 |
| VIT_00s0189g00060.t01 | Wine grape | cytosol, extracellular, nucleus | 38.46 | 62.5 |
| Bra008162.1-P | Field mustard | extracellular | 59.62 | 61.39 |
| CDX70601 | Canola | extracellular | 62.5 | 61.32 |
| AT5G15230.1 | Thale cress | extracellular | 62.5 | 61.32 |
| CDY71845 | Canola | extracellular | 58.65 | 60.4 |
| CDX91001 | Canola | extracellular | 61.54 | 60.38 |
| CDX85557 | Canola | extracellular | 61.54 | 60.38 |
| Bra023513.1-P | Field mustard | extracellular | 61.54 | 60.38 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 53.85 | 59.57 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 53.85 | 56.57 |
| OQU89489 | Sorghum | extracellular | 62.5 | 56.52 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 53.85 | 55.45 |
| Os09t0414900-01 | Rice | extracellular | 59.62 | 55.36 |
| VIT_00s0189g00070.t01 | Wine grape | endoplasmic reticulum, extracellular | 45.19 | 54.02 |
| Os06t0266800-02 | Rice | extracellular | 56.73 | 53.64 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 53.85 | 50.45 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 54.81 | 50.44 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 53.85 | 50.0 |
| VIT_08s0007g05860.t01 | Wine grape | extracellular | 53.85 | 49.12 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 52.88 | 49.11 |
| EER89583 | Sorghum | extracellular | 50.96 | 46.49 |
| Zm00001d023290_P001 | Maize | extracellular | 55.77 | 44.96 |
| EES16564 | Sorghum | extracellular | 54.81 | 44.88 |
| VIT_18s0001g09460.t01 | Wine grape | extracellular | 35.58 | 42.05 |
| CDX78620 | Canola | cytosol | 53.85 | 40.0 |
| VIT_03s0091g00390.t01 | Wine grape | extracellular | 32.69 | 38.64 |
| OQU77894 | Sorghum | extracellular | 50.0 | 37.96 |
| Zm00001d038056_P001 | Maize | extracellular | 50.0 | 35.86 |
| Os05t0376800-01 | Rice | extracellular | 50.0 | 34.21 |
| VIT_07s0129g00580.t01 | Wine grape | extracellular | 30.77 | 25.2 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 51.92 | 22.41 |
Protein Annotations
| EntrezGene:100248537 | wikigene:100248537 | MapMan:11.10.2.1.1 | ProteinID:CBI15224 | ProteinID:CBI15224.3 | UniProt:D7SIB4 |
| EMBL:FN594950 | InterPro:GASA | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009744 | GO:GO:0009749 |
| GO:GO:0009750 | GO:GO:0080167 | EntrezGene:LOC100248537 | wikigene:LOC100248537 | PFAM:PF02704 | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF22 | SignalP:SignalP-noTM | UniParc:UPI00015C8C40 | ArrayExpress:VIT_17s0000g06210 | EnsemblPlantsGene:VIT_17s0000g06210 | EnsemblPlants:VIT_17s0000g06210.t01 |
| unigene:Vvi.20281 | RefSeq:XP_002284937 | RefSeq:XP_002284937.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:+:6769421..6770613
Molecular Weight (calculated)
11482.2 Da
IEP (calculated)
9.081
GRAVY (calculated)
-0.202
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLVPLLLL ALFSISMVAT KVMAKEAQYH LDSGSYGPGS LKSNQCPSQC TRRCSKTQYH KPCMFFCQKC CAKCLCVPPG YYGNKAVCPC YNNWKTKEGG
101: PKCP
101: PKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.