Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 | |
| Zm00001d052721_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | Zm00001d052721_P001 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16564 | Sorghum | extracellular | 76.74 | 77.95 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 43.41 | 59.57 |
| PGSC0003DMT400083077 | Potato | extracellular | 47.29 | 59.22 |
| Solyc06g069790.2.1 | Tomato | extracellular | 46.51 | 57.69 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 44.19 | 57.58 |
| CDY71845 | Canola | extracellular | 44.96 | 57.43 |
| Bra008162.1-P | Field mustard | extracellular | 44.96 | 57.43 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 44.96 | 57.43 |
| Solyc03g116060.2.1 | Tomato | extracellular | 44.96 | 55.77 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 44.96 | 55.77 |
| AT1G74670.1 | Thale cress | extracellular | 43.41 | 55.45 |
| PGSC0003DMT400050285 | Potato | extracellular | 44.19 | 54.81 |
| Os06t0266800-02 | Rice | extracellular | 46.51 | 54.55 |
| CDX85557 | Canola | extracellular | 44.19 | 53.77 |
| CDX91001 | Canola | extracellular | 44.19 | 53.77 |
| Bra023513.1-P | Field mustard | extracellular | 44.19 | 53.77 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 44.19 | 53.77 |
| KRG93532 | Soybean | extracellular | 45.74 | 53.64 |
| KRH54552 | Soybean | extracellular | 43.41 | 52.83 |
| KRH63343 | Soybean | extracellular | 42.64 | 51.89 |
| CDX70601 | Canola | extracellular | 42.64 | 51.89 |
| Zm00001d030236_P001 | Maize | extracellular | 41.86 | 51.43 |
| KRH01173 | Soybean | extracellular | 42.64 | 51.4 |
| AT5G15230.1 | Thale cress | extracellular | 41.86 | 50.94 |
| KRH40097 | Soybean | extracellular | 41.86 | 50.47 |
| Os09t0414900-01 | Rice | extracellular | 43.41 | 50.0 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 41.86 | 47.79 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 41.09 | 47.32 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 41.09 | 47.32 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 40.31 | 46.85 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 43.41 | 46.28 |
| Zm00001d013222_P001 | Maize | extracellular | 30.23 | 40.62 |
| Zm00001d038056_P001 | Maize | extracellular | 44.19 | 39.31 |
| CDX78620 | Canola | cytosol | 37.98 | 35.0 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 42.64 | 22.82 |
Protein Annotations
| EnsemblPlants:Zm00001d023290_P001 | EnsemblPlants:Zm00001d023290_T001 | EnsemblPlantsGene:Zm00001d023290 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF8 |
| PFAM:PF02704 | ProteinID:AQK38850.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004A1A1 |
| UniProt:K7TE59 | MapMan:11.10.2.1.1 | : | : | : | : |
Description
php20075a(gast)GAST1 protein
Coordinates
chr10:-:2230214..2231452
Molecular Weight (calculated)
13565.4 Da
IEP (calculated)
8.991
GRAVY (calculated)
-0.572
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRNKAAAL LLCFLFLAAV AASAAEMIAG SGIGDGEGEE LDKGGGGGGG HHKHEGYKNK DGKGNLKPSQ CGGECRRRCS KTHHKKPCLF FCNKCCAKCL
101: CVPPGTYGNK ETCPCYNNWK TKKGGPKCP
101: CVPPGTYGNK ETCPCYNNWK TKKGGPKCP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.