Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os07t0498800-01 | |
| Os10t0114400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | Os10t0114400-01 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | Os07t0498800-01 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89489 | Sorghum | extracellular | 83.93 | 81.74 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 78.57 | 77.88 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 77.68 | 77.68 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 75.89 | 75.89 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 75.0 | 75.68 |
| Solyc03g116060.2.1 | Tomato | extracellular | 58.04 | 62.5 |
| PGSC0003DMT400050285 | Potato | extracellular | 57.14 | 61.54 |
| PGSC0003DMT400083077 | Potato | extracellular | 56.25 | 61.16 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 57.14 | 60.38 |
| KRH40097 | Soybean | extracellular | 57.14 | 59.81 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 55.36 | 59.62 |
| Solyc06g069790.2.1 | Tomato | extracellular | 55.36 | 59.62 |
| KRG93532 | Soybean | extracellular | 58.04 | 59.09 |
| AT1G74670.1 | Thale cress | extracellular | 52.68 | 58.42 |
| KRH01173 | Soybean | extracellular | 55.36 | 57.94 |
| CDY71845 | Canola | extracellular | 50.89 | 56.44 |
| Bra008162.1-P | Field mustard | extracellular | 50.89 | 56.44 |
| KRH63343 | Soybean | extracellular | 52.68 | 55.66 |
| Os10t0115550-00 | Rice | endoplasmic reticulum, extracellular | 34.82 | 54.93 |
| KRH54552 | Soybean | extracellular | 51.79 | 54.72 |
| Os06t0266800-02 | Rice | extracellular | 52.68 | 53.64 |
| CDX91001 | Canola | extracellular | 47.32 | 50.0 |
| CDX85557 | Canola | extracellular | 47.32 | 50.0 |
| CDX70601 | Canola | extracellular | 47.32 | 50.0 |
| Bra023513.1-P | Field mustard | extracellular | 47.32 | 50.0 |
| AT5G15230.1 | Thale cress | extracellular | 45.54 | 48.11 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 47.32 | 43.8 |
| Zm00001d023290_P001 | Maize | extracellular | 50.0 | 43.41 |
| Os03t0760800-01 | Rice | extracellular | 32.14 | 38.71 |
| CDX78620 | Canola | cytosol | 44.64 | 35.71 |
| Os05t0376800-01 | Rice | extracellular | 46.43 | 34.21 |
Protein Annotations
| EMBL:AK059073 | EnsemblPlants:Os09t0414900-01 | EnsemblPlantsGene:Os09g0414900 | EntrezGene:4347055 | InterPro:GASA | PANTHER:PTHR23201 |
| PANTHER:PTHR23201:SF23 | PFAM:PF02704 | ProteinID:BAD28903.1 | ProteinID:BAF25084.1 | ProteinID:BAT08074.1 | RefSeq:XP_015611416.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI00003CE834 | UniProt:Q6ER17 | MapMan:11.10.2.1.1 | : |
Description
Similar to GASA5-like protein (Fragment). (Os09t0414900-01)
Coordinates
chr9:+:14828981..14830515
Molecular Weight (calculated)
12149.8 Da
IEP (calculated)
8.801
GRAVY (calculated)
-0.210
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAGRLLVL FAIALLAISI AEHKALAKGS TSEHDDNVYQ VSKGGQGSLK SYQCSPQCAY RCSQTQYKKP CLFFCNKCCN ACLCVPSGLY GNKGECPCYN
101: NWKTKRGGPK CP
101: NWKTKRGGPK CP
001: MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC
101: P
101: P
Arabidopsis Description
GASA6Gibberellin-regulated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMQ7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.